View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16892_high_4 (Length: 401)
Name: NF16892_high_4
Description: NF16892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16892_high_4 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 28609044 - 28608655
Alignment:
| Q |
1 |
gctttaccaaacaagagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacctc |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28609044 |
gctttaccaaacaggagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagataatgcttcgcgatcatcaggacctc |
28608945 |
T |
|
| Q |
101 |
caacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccaccgagcaaggtgcactttgcatcacatt |
200 |
Q |
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| T |
28608944 |
caacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccacagagcaaggtgcactttgcatcacatt |
28608845 |
T |
|
| Q |
201 |
caagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcg |
300 |
Q |
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| T |
28608844 |
caagtttatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcg |
28608745 |
T |
|
| Q |
301 |
ttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctg |
390 |
Q |
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| T |
28608744 |
ttaactaaattgtatatgtcttcgtgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctg |
28608655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 8 - 387
Target Start/End: Original strand, 437867 - 438246
Alignment:
| Q |
8 |
caaacaagagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaa |
107 |
Q |
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| T |
437867 |
caaacaggagcatccgaaccactgataattgggttcctatgcgtcctgccattctccatgcaacagctaaggcttcgcgatcatcaggaccaccaacaaa |
437966 |
T |
|
| Q |
108 |
gatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttg |
207 |
Q |
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||||||||||||||||||||| | ||||||| |||||||||| ||| || ||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
437967 |
gatcatacaaatacgaaaatttaaagttggtaatgacccaagatcacggtccacaaatattcccacagagcaaggtgcactttgcatcacattcaagttt |
438066 |
T |
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| Q |
208 |
atatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaacta |
307 |
Q |
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| T |
438067 |
atatctttgtatgcagtattagttgtttcgagtgcaccttctgaacttagttgtttgtggaatggaaggagaatcaaacttgtacatttttcattagccg |
438166 |
T |
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| Q |
308 |
aattgtatatgtcttcctgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctct |
387 |
Q |
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| |||||||| ||||| |||||||||||||| | ||||||||||||| |||| ||||| |||||||||||||||||| |
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| T |
438167 |
agttgtatatatcttcgtgaatggttgcatagtttgacacaacatttagtgtttggactctaatagcatcatatgcctct |
438246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 8 - 388
Target Start/End: Complemental strand, 13660408 - 13660028
Alignment:
| Q |
8 |
caaacaagagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaa |
107 |
Q |
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||||||||||||||||||||| | | | |||||||| ||| || |||||||||||| |||||||| ||||| |||||||||||||||||| ||| |
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| T |
13660408 |
caaacaagagcatccgaaccaatgataatcgggttcctgggtgccccaccatcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaa |
13660309 |
T |
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| Q |
108 |
gatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttg |
207 |
Q |
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|||||||||||| ||||| |||||||||| || ||||||||||||||||||||||| | |||||| |||||||||| | |||||||||||||| ||| |
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| T |
13660308 |
gatcatacaaattcgaaagttcatttttgttattgacccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggttt |
13660209 |
T |
|
| Q |
208 |
atatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaacta |
307 |
Q |
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||||||||| | |||||| ||||||||| | ||||||| | ||||| ||||| ||||||||||| | ||||| |||||| ||||||| ||| | |
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| T |
13660208 |
atatctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatggaagtataatcatgcttgtgcgtttttcattagcag |
13660109 |
T |
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| Q |
308 |
aattgtatatgtcttcctgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctc |
388 |
Q |
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| || |||||||| || |||||||||| ||| |||||||||||||| ||||| ||||||| ||||||||||||||||| |
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| T |
13660108 |
agttatatatgtcctcatgaatggttgaataggatgacacaacatttaaggtttcgactctgacagcatcatatgcctctc |
13660028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 57 - 356
Target Start/End: Complemental strand, 13652859 - 13652560
Alignment:
| Q |
57 |
catcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacga |
156 |
Q |
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|||||||||||| |||| ||| ||||| | |||||||| || |||||||| ||||||||||| ||||| |||||||| ||||| | ||||||||||||| |
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| T |
13652859 |
catcctccatgcaacagttaaggcttcatggtcatcagggccaccaacaaatatcatacaaattcgaaagttcattttcggtaatgtcccaagattacga |
13652760 |
T |
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| Q |
157 |
tcaacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggactta |
256 |
Q |
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|||||||| | |||||| |||||||||||| ||||||||||||||| ||| ||||||||| | |||||| ||||||||| | ||||||| | ||||| |
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| T |
13652759 |
tcaacaaagattcccacagagcaaggtgcagtttgcatcacattcaggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaactta |
13652660 |
T |
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| Q |
257 |
gttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaa |
356 |
Q |
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| T |
13652659 |
agtgtttatggaatggaagtataatcatgcttgtgtgtttttcattagctgaattatatatgtcctcgtgaatggttgcataggatgacacaacatttaa |
13652560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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