View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16892_high_6 (Length: 374)
Name: NF16892_high_6
Description: NF16892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16892_high_6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 374
Target Start/End: Original strand, 54169543 - 54169906
Alignment:
| Q |
13 |
agagatagcaagacttcgtaaccaattcgaaactgctaaacacagttttctcaacattcctgatgcactcaaagaaatgcctaaaatgaatcctaaaggt |
112 |
Q |
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| T |
54169543 |
agagatagcaagacttcgtaaccaattcgaatctgctaaacacagttttctcaacattcctgatgcactcaaagaaatgcctaaaatgaatcctaaaggt |
54169642 |
T |
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| Q |
113 |
tactcaattgtttcggcgtgttattttctattcaattgaattgaatgagtgtttgcatgcatgctttattctattgtttgtgaatgttcatgtattttct |
212 |
Q |
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| T |
54169643 |
tactcaattgcttcggcgtgttattttctattcaattaaattgaatgagtgtttgcatgcatgctttgttctattgtttgtgaatgttgatgtattttct |
54169742 |
T |
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| Q |
213 |
tcta--tgtgtattgaattaggcatttatgtgaataagaacttgagattagacagattgcaagtctatggtttcgattacgattacacattagcacatta |
310 |
Q |
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| T |
54169743 |
tctatctgtgtattgaattaggcatttatgtgaataagaacttgagattagacagattgcaagtctatggtttcgattacgattacacattagcacatta |
54169842 |
T |
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| Q |
311 |
ctccgatcatttgcagactttgatatatgaccttgccaaggagtatatggttaacgaggttagc |
374 |
Q |
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| T |
54169843 |
ctccgatcatttgcagactttgatatatgaccttgccaaggagtatatggttaacgaggttagc |
54169906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 54137026 - 54137085
Alignment:
| Q |
235 |
tttatgtgaataagaacttgagattagacagattgcaagtctatggtttcgattacgatt |
294 |
Q |
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| T |
54137026 |
tttatgtgaataagaacttgagattagatagattgcaagtctatgctttcaattacgatt |
54137085 |
T |
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