View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16892_high_8 (Length: 365)
Name: NF16892_high_8
Description: NF16892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16892_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 12049968 - 12050319
Alignment:
| Q |
1 |
ttatggagataccaattgaagagcaaaaagcctttagccatgttattagattaatttcagcatcagttgacgaagtgtcaatccaaggtggcctttcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12049968 |
ttatggagataccaattgaagagcaaaaggcctttagccatgttattagattaatttcagcatcagttgacgaagtctcaatccaaggtggcctttcttc |
12050067 |
T |
|
| Q |
101 |
tgatgtcattgagcaggtgaaaccttcaacgacttgtacttgcgttgcaattttatttgtatagtctggattttagttggttgattatttatatttgtgt |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
12050068 |
tgatgtcattg-gcaggtgaaaccttcaacgacttgtacttgcgttgcaattttatttgtatagtctgaattttagttgcttgattatttatatttgtgt |
12050166 |
T |
|
| Q |
201 |
aggtcgaggtagaagttcaacgcttaagtgttttgcaagccagtaagatgaaggaattagtgtttaaaagacagaatgaacttgaacaaatttacaaagg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12050167 |
aggtcgaggtagaagttcaacgcttaagtgttttgaaagccagtaagatgaaggaattagtgtttaaaagacacaatgaacttgaacaaatttacaaagg |
12050266 |
T |
|
| Q |
301 |
agatcacatggatatggatagtgaagctctagacagattctgatcaatctcat |
353 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12050267 |
agatcacatggatatggatagtgaagctgtagacagattctgatcaatctcat |
12050319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 15580359 - 15580017
Alignment:
| Q |
1 |
ttatggagataccaattgaagagcaaaaagcctttagccatgttattagattaatttcagcatcagttgacgaagtgtcaatccaaggtggcctttcttc |
100 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||| | |
|
|
| T |
15580359 |
ttatggagatacccattgatgagcaaaaggcctttagccatgttactagattaatttcagcatcagttgatgaagtgtcaacccaaggtggcctttctgc |
15580260 |
T |
|
| Q |
101 |
tgatgtcattgagcaggtgaaaccttcaacgacttgtacttgcgttgcaattttatttgtatagtctggattttagttggttgattatttatatttgtgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||| ||||| ||| ||| |||||||||||||||| |
|
|
| T |
15580259 |
tgatgtcattgagcaggtgaaaccttcaacgacttgtactctcattgcaattt-atttgtatagtctgaattttcattgcttggttatttatatttgtgt |
15580161 |
T |
|
| Q |
201 |
aggtcgaggtagaagttcaacgcttaagtgttttgcaagccagtaagatgaaggaattagtgtttaaaagacagaatgaacttgaacaaatttacaaagg |
300 |
Q |
| |
|
|||| ||||| |||||||| | |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| |
|
|
| T |
15580160 |
aggttgaggttgaagttcagcagttaaatgttttgaaagccagtaagatgaaggaattagtgtttaaaagacagaatgaacttgaagaaatatacagagg |
15580061 |
T |
|
| Q |
301 |
agatcacatggatatggatagtgaagct-ctagacagattctga |
343 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
15580060 |
agttcacatggatatggatagtgaagctgctagacagactctga |
15580017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 40 - 276
Target Start/End: Original strand, 8334419 - 8334656
Alignment:
| Q |
40 |
atgttattagattaatttcagcatcagttgacgaagtgtcaatccaaggtggcctttcttctgatgtcattgagcaggtgaaaccttcaacgacttgtac |
139 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| |||| || || ||||||||||||||||||||||||| || |
|
|
| T |
8334419 |
atgttattggattaatttcagcatcagttgacgaagtgtcaatccacgggagcctttctaatgatatcgttaagcaggtgaaaccttcaacgacttgaac |
8334518 |
T |
|
| Q |
140 |
ttgcgttgcaatttt-atttgtatagtctggattttagttggttgattatttatatttgtgtaggtcgaggtagaagttcaacgcttaagtgttttgcaa |
238 |
Q |
| |
|
|||| |||||||||| |||| ||| |||| |||||||||| ||||| |||||||||| ||||||| || || |||||||| |||||| |||||| | |
|
|
| T |
8334519 |
ttgcattgcaattttaatttctatcatctgaattttagttgcttgatcatttatatttatgtaggttgatgttgaagttcagcgcttacaagttttgaat |
8334618 |
T |
|
| Q |
239 |
gccagtaagatgaaggaattagtgtttaaaagacagaa |
276 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8334619 |
cccagtaagatgaaggaatttgtgtttaaaagacagaa |
8334656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 250 - 343
Target Start/End: Original strand, 8334654 - 8334748
Alignment:
| Q |
250 |
gaaggaattagtgtttaaaagacagaatgaacttgaacaaatttacaaaggagatcacatggatatggatagtgaagct-ctagacagattctga |
343 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||| | | ||||| ||||||||||||||| | ||||| ||||||||||||||| |
|
|
| T |
8334654 |
gaaggaattagcgtttaaaagacagaatgaacttgaagaaattcatagaggagcacacatggatatggatgctaaagctgctagacagattctga |
8334748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 11909026 - 11908683
Alignment:
| Q |
1 |
ttatggagataccaattgaagagcaaaaagcctttagccatgttattagattaatttcagcatcagttgacgaagtgtcaatccaaggtggcctttcttc |
100 |
Q |
| |
|
|||||||||||| ||||| ||| |||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| |
|
|
| T |
11909026 |
ttatggagatacagattgatgagaaaaaggcctttaaccatgttattagattaatttcagcatcagttgatgaagtgtcaatcgaaggtggcctttgttc |
11908927 |
T |
|
| Q |
101 |
tgatgtcattgagcaggtgaaaccttcaacgacttgtacttgcgttgcaattttatttgtatagtctggattttagttggttgattatttatatttgtgt |
200 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
11908926 |
taatgtcagtgagcaggtgaaaccttcaacgacttgtacttgcattgcaattttatttgtatagtctgaattttagttgcttgattatttatatttgtgt |
11908827 |
T |
|
| Q |
201 |
aggtcgaggtagaagttcaacgcttaagtgttttgcaagccagtaagatgaaggaattagtgtttaaaagacagaatgaacttgaacaaatttacaaagg |
300 |
Q |
| |
|
||| ||||| |||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||| ||| |
|
|
| T |
11908826 |
tggttgaggttgaagttcagcgcttaaatgttttgaaagccagtaagatgaaggaattagtgtttaaaagatagaatgtacttgaagaaatttacagagg |
11908727 |
T |
|
| Q |
301 |
agatcacatggatatggatagtgaagct-ctagacagattctga |
343 |
Q |
| |
|
|| ||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11908726 |
agttcatatggatatggatagtgaagctgttagacagattctga |
11908683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University