View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16892_high_9 (Length: 338)
Name: NF16892_high_9
Description: NF16892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16892_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 28014086 - 28013776
Alignment:
| Q |
1 |
aggagagcaaacatttatatttttggaactaaaatatggactaatattatcagcggtgacaattgcagacatatacatgcatgaagaatacaatacaagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28014086 |
aggagagcaaacatttatatttttggaactaaaatatggactaatattatcagcggttacaattgcagacatatacatgcattaagaatacaatacaagc |
28013987 |
T |
|
| Q |
101 |
acgagatgtaccagagatgagaattaccatagaagaggagagtttttccaactagttggcctaagatcctgactcctgagaataagaaaaaataaacaaa |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28013986 |
acgaaatgtaccagagatgagaattaccatagaagaggagagtttttccaattagttggcctaagatcctgactcctgagaataagaaaaaataaacaaa |
28013887 |
T |
|
| Q |
201 |
agagaactattaatgattgtagattatattagaaatggttcagaaagaacaaagtggacaagaatgaaacagggaagagaagcttaccagcacttgtata |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
28013886 |
agagaactattaatgattgtagattatattagaaatggttcagaaagaacaaattggaaaagaatgaaacgtggaaaagaagcttaccagcacttgtata |
28013787 |
T |
|
| Q |
301 |
gcagagatttg |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
28013786 |
gcagagatttg |
28013776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 54960855 - 54960889
Alignment:
| Q |
118 |
tgagaattaccatagaagaggagagtttttccaac |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
54960855 |
tgagaattaccatagaagaggagagtttttccaac |
54960889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University