View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16893_high_1 (Length: 243)
Name: NF16893_high_1
Description: NF16893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16893_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 26 - 227
Target Start/End: Original strand, 7156245 - 7156446
Alignment:
| Q |
26 |
gccaaagtatcaccatgacaaagtatgcacaaacaatccatcatcacatttaagattggagaaaacacagacatccctccataatcaggctgcaatatct |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7156245 |
gccaaagtatcaccatgacaaagtatgcacaaacaatccatcatcacatttaagattggagaaaacacagacatccctccataatcaggctgcaatatct |
7156344 |
T |
|
| Q |
126 |
ctcgaaaagactccgtctccaaatcaaaagaaacaatgcttcgtgtataaggaaaacgatgttctgcttcaaaccaattaaaagttccactaacgaaatt |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7156345 |
ctcgaaaagactccgtctccaaatcaaaagaaacaatgcttcgtgtataaggaaaacgatgttctgcttcaaaccaattaaaagttccactaacgaaatt |
7156444 |
T |
|
| Q |
226 |
tc |
227 |
Q |
| |
|
|| |
|
|
| T |
7156445 |
tc |
7156446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 7174503 - 7174561
Alignment:
| Q |
103 |
tccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaa |
161 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||| ||||||||| || |||||||| |
|
|
| T |
7174503 |
tccataatcaggctgcaatatctctccataagactcattctccaaatgaagagaaacaa |
7174561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 7160901 - 7160946
Alignment:
| Q |
117 |
gcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaat |
162 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||||||| ||||||||| |
|
|
| T |
7160901 |
gcaatagctctcgataagactccttctccaaatcaagagaaacaat |
7160946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 9825635 - 9825696
Alignment:
| Q |
102 |
ctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaatg |
163 |
Q |
| |
|
||||||||||||||||||| |||||| || | ||||| ||| ||||||||| |||||||||| |
|
|
| T |
9825635 |
ctccataatcaggctgcaaaatctcttgataggactctgtccccaaatcaagagaaacaatg |
9825696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 9819955 - 9820016
Alignment:
| Q |
102 |
ctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaatg |
163 |
Q |
| |
|
||||||||||||||||||| |||||| || | ||||| || ||||||||| |||||||||| |
|
|
| T |
9819955 |
ctccataatcaggctgcaaaatctcttgataggactctctccccaaatcaagagaaacaatg |
9820016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University