View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16893_high_12 (Length: 344)
Name: NF16893_high_12
Description: NF16893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16893_high_12 |
 | |
|
| [»] scaffold0491 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0491 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 1139 - 1440
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1139 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
1238 |
T |
|
| Q |
121 |
tatgtcggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1239 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
1338 |
T |
|
| Q |
221 |
aacaaccttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
320 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1339 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
1438 |
T |
|
| Q |
321 |
tc |
322 |
Q |
| |
|
|| |
|
|
| T |
1439 |
tc |
1440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 6026 - 6327
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
||||||||||||||||||||||| | ||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
6026 |
acatcatcatacaagacagagaataagcttcctctatccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaaaccataaagcttcacga |
6125 |
T |
|
| Q |
121 |
tatgtcggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||| |||||||| ||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6126 |
tatgtttgtgctttatttctgttaaaattctcacttcatttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
6225 |
T |
|
| Q |
221 |
aacaaccttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
320 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
6226 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatacaatatctcatgtcaaagtcttctgtcgctttgattatg |
6325 |
T |
|
| Q |
321 |
tc |
322 |
Q |
| |
|
|| |
|
|
| T |
6326 |
tc |
6327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 18739260 - 18739561
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18739260 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
18739359 |
T |
|
| Q |
121 |
tatgtcggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18739360 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
18739459 |
T |
|
| Q |
221 |
aacaaccttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
320 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18739460 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
18739559 |
T |
|
| Q |
321 |
tc |
322 |
Q |
| |
|
|| |
|
|
| T |
18739560 |
tc |
18739561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 18744224 - 18744525
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18744224 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
18744323 |
T |
|
| Q |
121 |
tatgtcggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18744324 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
18744423 |
T |
|
| Q |
221 |
aacaaccttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
320 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18744424 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
18744523 |
T |
|
| Q |
321 |
tc |
322 |
Q |
| |
|
|| |
|
|
| T |
18744524 |
tc |
18744525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 18749185 - 18749486
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
||||||||||||||||||||||| | ||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18749185 |
acatcatcatacaagacagagaataagcttcctctatccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
18749284 |
T |
|
| Q |
121 |
tatgtcggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||| |||||||| ||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18749285 |
tatgtttgtgctttatttctgttaaaattctcacttcatttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
18749384 |
T |
|
| Q |
221 |
aacaaccttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
320 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
18749385 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatacaatatctcatgtcaaagtcttctgtcgctttgattatg |
18749484 |
T |
|
| Q |
321 |
tc |
322 |
Q |
| |
|
|| |
|
|
| T |
18749485 |
tc |
18749486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 18723533 - 18723834
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
||||||||||||||||||||||| | ||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
18723533 |
acatcatcatacaagacagagaataagcttcctctatccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacta |
18723632 |
T |
|
| Q |
121 |
tatgtcggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||| |||||||| ||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18723633 |
tatgtttgtgctttatttctgttaaaattctcacttcatttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
18723732 |
T |
|
| Q |
221 |
aacaaccttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
320 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
18723733 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatacaatatctcatgtcaaagtcttctgtcgctttgattatg |
18723832 |
T |
|
| Q |
321 |
tc |
322 |
Q |
| |
|
|| |
|
|
| T |
18723833 |
tc |
18723834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 18732996 - 18733045
Alignment:
| Q |
131 |
ctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaag |
180 |
Q |
| |
|
||||| |||||||||||| |||||||| ||||| ||||||| |||||||| |
|
|
| T |
18732996 |
ctttatttctgataatattctcacttcatttctaaaactctaatcaaaag |
18733045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 1596197 - 1595896
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1596197 |
acatcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
1596098 |
T |
|
| Q |
121 |
tatgtcggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1596097 |
tatgtcggtgctttatttctgataatattctcacttcatttttgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
1595998 |
T |
|
| Q |
221 |
aacaaccttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
320 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1595997 |
aacaacctttccacttggtaattgtgccctgtaaacacttccatatgctcccgttccaatgcaatatctcatgtcaaagtcttctgttgctttgattatg |
1595898 |
T |
|
| Q |
321 |
tc |
322 |
Q |
| |
|
|| |
|
|
| T |
1595897 |
tc |
1595896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 1106140 - 1105839
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1106140 |
acatcatcatacaagatagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
1106041 |
T |
|
| Q |
121 |
tatgtcggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1106040 |
tatgtcggtgctttatttctgataatattctcacttcatttttgaaactctcatcaaaagatggaacctcgacttcatagccgtgaagtttctttaaggc |
1105941 |
T |
|
| Q |
221 |
aacaaccttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
320 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
1105940 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctccagttccaatgcaatatctcatgtcaaagtcttccgttgctttgattatg |
1105841 |
T |
|
| Q |
321 |
tc |
322 |
Q |
| |
|
|| |
|
|
| T |
1105840 |
tc |
1105839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 1541489 - 1541790
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
||||||||||||||||||||||| | ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1541489 |
acatcatcatacaagacagagaataagcttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcaaaatccataaagcttcacaa |
1541588 |
T |
|
| Q |
121 |
tatgtcggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1541589 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
1541688 |
T |
|
| Q |
221 |
aacaaccttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
320 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1541689 |
aacaacctttccacatggtaattgtgccttgtaaacacttccatatgctccggttccaatgcaatatctcatgtcgaagtcttctgttgctttgatgatg |
1541788 |
T |
|
| Q |
321 |
tc |
322 |
Q |
| |
|
|| |
|
|
| T |
1541789 |
tc |
1541790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 1557433 - 1557734
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1557433 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatatatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacga |
1557532 |
T |
|
| Q |
121 |
tatgtcggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||| |||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
1557533 |
tatgtttgtgctttatttctgataatattctcacttcatttctgaaactctcatcaaaagatggaacctcagcttcatagccgtgaagtttctttaaagc |
1557632 |
T |
|
| Q |
221 |
aacaaccttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
320 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1557633 |
aacaacattaccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
1557732 |
T |
|
| Q |
321 |
tc |
322 |
Q |
| |
|
|| |
|
|
| T |
1557733 |
tc |
1557734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 21 - 311
Target Start/End: Complemental strand, 1604527 - 1604237
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1604527 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
1604428 |
T |
|
| Q |
121 |
tatgtcggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1604427 |
tatgtcggtgctttatttctgataatattttcacttcatttttgaaactctcatcaaaagatggaacctcttcttcatagccgtgaagtttctttaaggc |
1604328 |
T |
|
| Q |
221 |
aacaaccttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgct |
311 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
1604327 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcgaagtcttccgttgct |
1604237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 1088791 - 1088490
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1088791 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
1088692 |
T |
|
| Q |
121 |
tatgtcggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||| |||||||| |||||||||||| |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1088691 |
tatgtttgtgctttatttctgataatattctcacttcatttttgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
1088592 |
T |
|
| Q |
221 |
aacaaccttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
320 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| |
|
|
| T |
1088591 |
aacaaccttgccacttggtaattgtgccttgtaaacacttctatatgctcctgttccaatgcaatatctcatgtcaaagtcctctgttgctttaataatg |
1088492 |
T |
|
| Q |
321 |
tc |
322 |
Q |
| |
|
|| |
|
|
| T |
1088491 |
tc |
1088490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 1550723 - 1551024
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
||||| ||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
1550723 |
acatcgtcatacaagacagtgaacaagcttcctctctccatgtactgatagatcaaaaacatgattctcttgtgcaagcagaatccatgaagcttcacaa |
1550822 |
T |
|
| Q |
121 |
tatgtcggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
1550823 |
tatgtcggtgctttatttctgtcaatattctcacttcatttctgaaactctcatcaaaagatggaacgtctgcttcatagccatgaagtttctttaaggc |
1550922 |
T |
|
| Q |
221 |
aacaaccttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
1550923 |
gacaaccttgccacatggtaattgtgccttgtaaacacttccatatgctccggttccaatgcaatatctcatgtcaaagtcttctgttgctttaataatg |
1551022 |
T |
|
| Q |
321 |
tc |
322 |
Q |
| |
|
|| |
|
|
| T |
1551023 |
tc |
1551024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 24 - 322
Target Start/End: Complemental strand, 2329828 - 2329530
Alignment:
| Q |
24 |
tcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatat |
123 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||| |||| | |||||||||||||||||||| |||| |
|
|
| T |
2329828 |
tcatcatacaagacagagaacaagctacctttctccatgtactcgtagatcaaaaacatgattcttctgtggagacagaatccataaagcttcacgatat |
2329729 |
T |
|
| Q |
124 |
gtcggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggcaac |
223 |
Q |
| |
|
| |||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2329728 |
gccggtgctttatatctgataatattctcacttcatttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttattgcaac |
2329629 |
T |
|
| Q |
224 |
aaccttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatgtc |
322 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
2329628 |
aacttttccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatacaatatctaatgtcaaagtcttctgttgctttaatgatgtc |
2329530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 22 - 322
Target Start/End: Complemental strand, 2321332 - 2321032
Alignment:
| Q |
22 |
catcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaat |
121 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| |||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2321332 |
catcatcatacaagacggagaacaaacttcctctctccatgtaatggtagatcaaaaacatgattcttttgtgcaagcaaaatccataaagcttcacaat |
2321233 |
T |
|
| Q |
122 |
atgtcggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggca |
221 |
Q |
| |
|
|| ||||||||||| |||||||||||| |||||||| ||||| ||||| |||||||||| ||| | ||||||||||||||||||||||||||| |||||| |
|
|
| T |
2321232 |
atttcggtgctttatttctgataatattctcacttcatttctaaaactttcatcaaaagctggcagctctgcttcatagccgtgaagtttcttcaaggca |
2321133 |
T |
|
| Q |
222 |
acaaccttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatgt |
321 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| | ||||||| |
|
|
| T |
2321132 |
acaacttttccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctaatgtcaaaatcttccgttgctctaatgatgt |
2321033 |
T |
|
| Q |
322 |
c |
322 |
Q |
| |
|
| |
|
|
| T |
2321032 |
c |
2321032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 24 - 322
Target Start/End: Complemental strand, 2337727 - 2337429
Alignment:
| Q |
24 |
tcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatat |
123 |
Q |
| |
|
|||||||||||| ||||||||| ||| |||||||||||||||| ||||||||||||||||||||| |||| | |||||||||||||||||||| |||| |
|
|
| T |
2337727 |
tcatcatacaagccagagaacaagctacctttctccatgtactcgtagatcaaaaacatgattcttctgtggagacagaatccataaagcttcacgatat |
2337628 |
T |
|
| Q |
124 |
gtcggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggcaac |
223 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2337627 |
gtcggtgctttatatctgataatattttcacttcatttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttattgcaac |
2337528 |
T |
|
| Q |
224 |
aaccttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatgtc |
322 |
Q |
| |
|
||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||| |
|
|
| T |
2337527 |
aacttttccacatggtaattgtgccttataaacacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtc |
2337429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 3955480 - 3955782
Alignment:
| Q |
20 |
gacatcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcaca |
119 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||||| ||||| |||||||||||||||||||| | |||||| ||||| || |||||||||||||||||| |
|
|
| T |
3955480 |
gacatcatcatgcaagacggagaacaagcttcctttttccatatactgatagatcaaaaacataactcttttatgcaaacaaaatccataaagcttcaca |
3955579 |
T |
|
| Q |
120 |
atatgtcggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaagg |
219 |
Q |
| |
|
|||| || |||||||| |||||||||||| ||||||| ||||| ||||| ||||||| |||||| ||||||||||| |||| |||||||| |||| | |
|
|
| T |
3955580 |
atatttctgtgctttatttctgataatattttcacttcatttctaaaactttcatcaagagatggcacctctgcttcgtagctatgaagtttttttagtg |
3955679 |
T |
|
| Q |
220 |
caacaaccttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgat |
319 |
Q |
| |
|
|||||| || |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||| ||||||| | ||||| |
|
|
| T |
3955680 |
caacaaatttaccacttggtaattgtgccttgtaaacacttccatatgctccttttccaatgcaatatttaatgtcaaagtcttttgttgctctaatgat |
3955779 |
T |
|
| Q |
320 |
gtc |
322 |
Q |
| |
|
||| |
|
|
| T |
3955780 |
gtc |
3955782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 9532075 - 9532375
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
|||||||||||||| | ||||||| ||||||||||| | ||| |||||||||||||||||||||||||||| ||| || |||||||||||||| |||| |
|
|
| T |
9532075 |
acatcatcatacaaaaacgagaacaaacttcctttctc-acgtattgatagatcaaaaacatgattcttttgtacaatcataatccataaagcttaacaa |
9532173 |
T |
|
| Q |
121 |
tatgtcggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||| | ||| |||| || | ||||||| ||| |||| ||| |||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
9532174 |
tatttatgtgatttattttttataatattctcgcttcatttttgaaactcgcatcaaaagatggcacctctgcttcatagatgtgaagtttctttaaggc |
9532273 |
T |
|
| Q |
221 |
aacaaccttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
320 |
Q |
| |
|
||||| ||| ||||||||||||| | |||||| |||||||||||||||||||| | ||||||||||| |||||||||| || | ||||||| || ||| |
|
|
| T |
9532274 |
gacaactttgtcacatggtaattgagtcttgtatacacttccatatgctcctgtccatatgcaatatctaatgtcaaagtgttgtattgctttaataatg |
9532373 |
T |
|
| Q |
321 |
tc |
322 |
Q |
| |
|
|| |
|
|
| T |
9532374 |
tc |
9532375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 30792447 - 30792145
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattctttt-gtgcaagcagaatccataaagcttcaca |
119 |
Q |
| |
|
|||||||||||||| ||| ||||| ||||| |||||| | ||| |||||||||||||||| ||||||||| |||||||||||||| ||||||||| ||| |
|
|
| T |
30792447 |
acatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattctttttgtgcaagcagaatctataaagcttaaca |
30792348 |
T |
|
| Q |
120 |
atatgtcggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaagg |
219 |
Q |
| |
|
|||| | |||||||| || ||||||||| |||||||| ||| ||||||| | ||||||||| || | || ||||||| ||||||||||| ||||| |
|
|
| T |
30792347 |
atatttatgtgctttatttatgataatattctcacttcatttatgaaacttgtaacaaaagatgacacatttgtttcatagttgtgaagtttctataagg |
30792248 |
T |
|
| Q |
220 |
caacaaccttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgat |
319 |
Q |
| |
|
||||||| |||||||||| ||| || | |||||| |||||| ||| | ||| ||| | ||| ||||||| |||||||||| || ||||||||| || || |
|
|
| T |
30792247 |
caacaactttgccacatgataaatgagtcttgtatacactttcatgtcctcatgtctcgatgtaatatctaatgtcaaagtgttatgttgctttaataat |
30792148 |
T |
|
| Q |
320 |
gtc |
322 |
Q |
| |
|
||| |
|
|
| T |
30792147 |
gtc |
30792145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 19250547 - 19250247
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
|||||||||||||| || ||||||| ||||| ||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19250547 |
acatcatcatacaaaaccgagaacaagcttcatttttc-atgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttaacaa |
19250449 |
T |
|
| Q |
121 |
tatgtcggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||| | ||| |||| | ||||||||| |||||||| ||||||||||| |||||||||| || || ||| |||||||| ||||| ||||||||| || |
|
|
| T |
19250448 |
tatttatgtgttttatatatgataatattctcacttcaattctgaaactcgcatcaaaagacggcacatctacttcatagttgtgaaatttctttaaagc |
19250349 |
T |
|
| Q |
221 |
aacaaccttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatg |
320 |
Q |
| |
|
||||| || |||||||||||| | | |||||| |||||| |||||| |||||| ||||||||||| |||||||||| || ||||||||| || ||| |
|
|
| T |
19250348 |
gacaactttaccacatggtaatcgagtcttgtatacactttcatatgatcctgtcatgatgcaatatctaatgtcaaagtgttgtgttgctttaataatg |
19250249 |
T |
|
| Q |
321 |
tc |
322 |
Q |
| |
|
|| |
|
|
| T |
19250248 |
tc |
19250247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 27 - 300
Target Start/End: Original strand, 41668820 - 41669093
Alignment:
| Q |
27 |
tcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtc |
126 |
Q |
| |
|
|||||||| || ||||||| ||| |||| | |||||| ||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||| | |
|
|
| T |
41668820 |
tcatacaaaactgagaacaaactttcttttttcatgtatcgatagattaaaaacattattcttttgtgcaagcaaaatccataaagcttaacaatattta |
41668919 |
T |
|
| Q |
127 |
ggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggcaacaac |
226 |
Q |
| |
|
||||||| || | ||||||| ||||||| ||||||||||| |||||||||||| || |||||||||||| ||||||||||||||||| ||| |
|
|
| T |
41668920 |
tctgctttattttttataatattttcacttcaattctgaaactcacatcaaaagatgacacatctgcttcatagttgtgaagtttctttaaggtggcaaa |
41669019 |
T |
|
| Q |
227 |
cttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
300 |
Q |
| |
|
|||||||||| |||||| | |||||| ||||||||||||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
41669020 |
tttgccacatgataattgagtcttgtatacacttccatatgcttatgtcacgatgcaatatctaatgtcaaagt |
41669093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 27 - 300
Target Start/End: Original strand, 42977746 - 42978019
Alignment:
| Q |
27 |
tcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtc |
126 |
Q |
| |
|
|||||||| || ||||||| ||| |||| | |||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| | |
|
|
| T |
42977746 |
tcatacaaaaccgagaacaaactttcttttttcatgtattgatagattaaaaacatgattcttttgtgcaagcaaaatccataaagcttaacaatattta |
42977845 |
T |
|
| Q |
127 |
ggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggcaacaac |
226 |
Q |
| |
|
||||||| || ||||||||| |||||||| |||||||| || |||||||||||| || |||||||||||| ||||||||||||||||| ||| |
|
|
| T |
42977846 |
tctgctttatttttgataatattctcacttcaattctgaaattcgcatcaaaagatgacacatctgcttcatagttgtgaagtttctttaaggtggcaaa |
42977945 |
T |
|
| Q |
227 |
cttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
300 |
Q |
| |
|
|||||||||| |||||| | |||||| ||||||||||||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
42977946 |
tttgccacatgataattgagtcttgtatacacttccatatgcttatgtcacgatgcaatatctaatgtcaaagt |
42978019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 300
Target Start/End: Complemental strand, 54123056 - 54122784
Alignment:
| Q |
28 |
catacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcg |
127 |
Q |
| |
|
||||||| || ||||||| ||| |||| | |||||| |||||||| |||||||||||||||||||||||||| ||| ||||||||| | |||| | |
|
|
| T |
54123056 |
catacaaaactgagaacaaactttcttttttcatgtattgatagattaaaaacatgattcttttgtgcaagcaaaatatataaagcttaaagatatttat |
54122957 |
T |
|
| Q |
128 |
gtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggcaacaacc |
227 |
Q |
| |
|
||||||| || | ||||||| |||||||| || |||||||| |||||||||||| || |||||||||||| ||||||||||||||||| ||| |
|
|
| T |
54122956 |
ctgctttattttttataatattctcacttcaattgtgaaactcacatcaaaagatgacacatctgcttcatagttgtgaagtttctttaaggtggcaaat |
54122857 |
T |
|
| Q |
228 |
ttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
300 |
Q |
| |
|
|||||||||| |||||| | |||||| ||||||||||||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
54122856 |
ttgccacatgataattgagtcttgtatacacttccatatgcttatgtcacgatgcaatatctaatgtcaaagt |
54122784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 59 - 300
Target Start/End: Original strand, 48712437 - 48712677
Alignment:
| Q |
59 |
catgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttaattctgataatatcctcacttcg |
158 |
Q |
| |
|
|||||| |||||||| |||| |||||||||||||||||||| |||||||||||||| ||||||| | || |||| || ||||||||| |||||||| |
|
|
| T |
48712437 |
catgtattgatagattgaaaatatgattcttttgtgcaagcaaaatccataaagcttaacaatatttatctg-tttatttttgataatattctcacttca |
48712535 |
T |
|
| Q |
159 |
tttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggcaacaaccttgccacatggtaattgtgccttgtaaacac |
258 |
Q |
| |
|
|||||||| || |||||||||| | || ||||||| |||| ||||||||||||||||| ||| |||||||||| |||||| | |||||| |||| |
|
|
| T |
48712536 |
attctgaaaatcgcatcaaaagaagacacatctgcttaatagttgtgaagtttctttaaggtggcaaatttgccacatgataattgagtcttgtatacac |
48712635 |
T |
|
| Q |
259 |
ttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
300 |
Q |
| |
|
||||||||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
48712636 |
ttccatatgcttatgtcacgatgcaatatctaatgtcaaagt |
48712677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 128 - 324
Target Start/End: Complemental strand, 16880331 - 16880134
Alignment:
| Q |
128 |
gtgctttaattctgataatatcctcac-ttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggcaacaac |
226 |
Q |
| |
|
|||||||| |||||||||||| ||||| ||| |||||||||||| |||||||||||| || | | |||||||| ||||| |||||||||||| |||| |
|
|
| T |
16880331 |
gtgctttatttctgataatattctcacattcatttctgaaactcgcatcaaaagatgacacttttacttcatagttgtgaaatttctttaaggcggcaac |
16880232 |
T |
|
| Q |
227 |
cttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatgtcca |
324 |
Q |
| |
|
|||| | |||||||| | | |||||| |||||||||||||||| ||| || ||||||||||| |||||||||| || |||| |||| || ||||||| |
|
|
| T |
16880231 |
tttgcaagatggtaatcgagtcttgtatacacttccatatgctcttgtgccgatgcaatatctaatgtcaaagtgttgtgtttctttaataatgtcca |
16880134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 59 - 300
Target Start/End: Complemental strand, 31658124 - 31657883
Alignment:
| Q |
59 |
catgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttaattctgataatatcctcacttcg |
158 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| | ||||||| || ||||||||| |||||||| |
|
|
| T |
31658124 |
catgtattgatagattaaaaacatgattcttttgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattctcacttca |
31658025 |
T |
|
| Q |
159 |
tttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggcaacaaccttgccacatggtaattgtgccttgtaaacac |
258 |
Q |
| |
|
|||||||| || |||||||||||| || ||| ||| ||| ||||||||||||||||| |||| |||||||||| |||||| | |||||| |||| |
|
|
| T |
31658024 |
attctgaaattcgcatcaaaagatgacacatctatttcgtagttgtgaagtttctttaaggtgacaaatttgccacatgataattgagtcttgtatacac |
31657925 |
T |
|
| Q |
259 |
ttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
300 |
Q |
| |
|
|||||| |||| ||| | ||||||||||| |||||||||| |
|
|
| T |
31657924 |
ttccatgtgcttatgtcacgatgcaatatctaatgtcaaagt |
31657883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 59 - 269
Target Start/End: Complemental strand, 36620712 - 36620505
Alignment:
| Q |
59 |
catgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttaattctgataatatcctcacttcg |
158 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| | ||||||| || ||||||||| |||||||| |
|
|
| T |
36620712 |
catgtattgatagattaaaaacatgattcttttgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattctcacttca |
36620613 |
T |
|
| Q |
159 |
tttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggcaacaaccttgccacatggtaattgtgccttgtaaacac |
258 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||| |||| ||||||||||||||||| ||| |||||||||| |||||| | |||||| | || |
|
|
| T |
36620612 |
attctgaaactcgcatcaaaagat---acatctgcttaatagttgtgaagtttctttaaggtggcaaatttgccacatgataattgagtcttgtataaac |
36620516 |
T |
|
| Q |
259 |
ttccatatgct |
269 |
Q |
| |
|
||||||||||| |
|
|
| T |
36620515 |
ttccatatgct |
36620505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 59 - 300
Target Start/End: Original strand, 8873098 - 8873340
Alignment:
| Q |
59 |
catgtactgatagatcaaaaacatgattcttttgtgcaagcagaa-tccataaagcttcacaatatgtcggtgctttaattctgataatatcctcacttc |
157 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||| || |||||||||||| | ||||| | ||||||| || | ||||||| |||||||| |
|
|
| T |
8873098 |
catgtattgatagattaaaaacatgattcttttgtgcaagcaaaaatccataaagcttaataatatttatctgctttattttttataatattctcacttc |
8873197 |
T |
|
| Q |
158 |
gtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggcaacaaccttgccacatggtaattgtgccttgtaaaca |
257 |
Q |
| |
|
|||||||||| ||||||| |||| || |||||||||||| ||||||||||||||||| ||| |||||||||| |||||| | |||||| ||| |
|
|
| T |
8873198 |
aattctgaaactggcatcaaacgatgacacatctgcttcatagttgtgaagtttctttaaggtcgcaaatttgccacatgataattgagtcttgtataca |
8873297 |
T |
|
| Q |
258 |
cttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
300 |
Q |
| |
|
|||||||||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
8873298 |
cttccatatgcttatgtcacgatgcaatatctaatgtcaaagt |
8873340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 59 - 269
Target Start/End: Original strand, 39102292 - 39102501
Alignment:
| Q |
59 |
catgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttaattctgataatatcctcacttcg |
158 |
Q |
| |
|
|||||| ||||| || ||||||||| |||||||||||||||| |||||||||||||| ||||||| | ||||||| || ||||||||| |||||||| |
|
|
| T |
39102292 |
catgtattgatatattaaaaacatgcttcttttgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattctcacttca |
39102391 |
T |
|
| Q |
159 |
tttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggcaacaaccttgccacatggtaattgtgccttgtaaacac |
258 |
Q |
| |
|
|||| |||||| |||||||||||| || ||||||| |||| |||||| |||||||||| ||| |||||||||| |||||| | |||||| | || |
|
|
| T |
39102392 |
attctaaaactcgcatcaaaagatgacacatctgcttaatagttgtgaag-ttctttaaggaggcaaatttgccacatgataattgagtcttgtataaac |
39102490 |
T |
|
| Q |
259 |
ttccatatgct |
269 |
Q |
| |
|
||||||||||| |
|
|
| T |
39102491 |
ttccatatgct |
39102501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 27 - 300
Target Start/End: Complemental strand, 1257950 - 1257677
Alignment:
| Q |
27 |
tcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtc |
126 |
Q |
| |
|
|||||||| || ||||||| ||| |||| | |||||| |||||||| ||||||||||||||||||||||| || ||| ||||||| || ||||||| | |
|
|
| T |
1257950 |
tcatacaaaaccgagaacaaactttcttttttcatgtattgatagattaaaaacatgattcttttgtgcaaacaaaattcataaagtttaacaatattta |
1257851 |
T |
|
| Q |
127 |
ggtgctttaattctgataatatcctcacttcgtttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggcaacaac |
226 |
Q |
| |
|
||||||| || ||||||||| |||||||| ||||||||||| |||||||| ||| || ||||||||||| ||||||||||||||||| ||| |
|
|
| T |
1257850 |
tctgctttatttttgataatattctcacttcaattctgaaactcgcatcaaaaaatgacacatctgcttcatatttgtgaagtttctttaaggtggcaaa |
1257751 |
T |
|
| Q |
227 |
cttgccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
300 |
Q |
| |
|
| |||||||| |||||| | |||||| |||||| |||||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
1257750 |
ttggccacatgataattgagtcttgtatacactttcatatgcttatgtcacgatgcaatatctaatgtcaaagt |
1257677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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