View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16893_high_3 (Length: 642)
Name: NF16893_high_3
Description: NF16893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16893_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 18 - 610
Target Start/End: Original strand, 34140257 - 34140844
Alignment:
| Q |
18 |
tcagctgggatgagagaaggtggtaggacaggattaacggctgtgatcatcgggttgtttttctttttgtcattgtttttcactcctttgttgtcaagtg |
117 |
Q |
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| T |
34140257 |
tcagctgggatgagagaaggtggtaggacaggattaacggctgtgatcatcgggttgtttttctttttgtcattgtttttcactcctttgttgtcaagtg |
34140356 |
T |
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| Q |
118 |
ttcctccatgggctataggtccttcactagtgatggttggggtaatgatgatgaaagttgtgaaggatattgactggactaatataaaggaagcagttcc |
217 |
Q |
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| T |
34140357 |
ttcctccatgggctataggtccttcactagtgatggttggggtaatgatgatgaaagttgtgaaggatattgactggactaatataaaggaagcagttcc |
34140456 |
T |
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| Q |
218 |
tgcttttgctataatgattttaatgcctctaacttattccatagcaaatggtattgttgctggtattggtctttatgttgctcttagtctttttgactat |
317 |
Q |
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| T |
34140457 |
tgcttttgctataatgattttaatgcctctaacttattccatagcaaatggtattgttgctggtattggtctttatgttgctcttagtctttttgactat |
34140556 |
T |
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| Q |
318 |
gctgcaagcatcataaattggttggggaaaatgaggagaaggatgatcaaggagcataatcaagtgtcggccactgcaacaacaggtgttgactcaaact |
417 |
Q |
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| T |
34140557 |
gctgcaagcatcataaattggttggggaaaatgaggagaaggatgatcaaggagcataatcaagtgtcggccactgcaacaacaggtgttgactcaaact |
34140656 |
T |
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| Q |
418 |
caatagtggaaatcatttgaaatgctctggttggtttggttgtcaatttttgacttttagggtattggtaagatcttgcttgtagatttttgctgctaaa |
517 |
Q |
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| T |
34140657 |
caatagtggaaatcatttgaaatgctctggttggtttggttgtcaatttttgacttttagggtattggtaagatcttgcttgtagatttttgctgctaaa |
34140756 |
T |
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| Q |
518 |
tgtataggctactagttataagacctatgcagacacaagataaattgcattcgcaacagtattattagtagtatagcagttatggtggttttg |
610 |
Q |
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| T |
34140757 |
tgtataggctactagttataagacctatgcagacacaagataaattgcattcacaacagtattagtag-----tagcagttatggtggttttg |
34140844 |
T |
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