View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16893_high_5 (Length: 559)
Name: NF16893_high_5
Description: NF16893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16893_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 18 - 526
Target Start/End: Complemental strand, 32696683 - 32696175
Alignment:
| Q |
18 |
acatcatcaatccattaaactattgaacacccaaatcttctcctttttatattcagatctggccccataacaacaatactcagtagctccattttttcaa |
117 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32696683 |
acatcatcaatccattaaacaattgaacacccaaatcttctcctttttatattcagatctggccccataacaacaatactcagtaactccattttttcaa |
32696584 |
T |
|
| Q |
118 |
aacggagaaaaatcgcagtcgttttacccttacagcagaaacatgtttgaatgcactgaactcaactcgctagaaaatgcagtcggagccggagttgctc |
217 |
Q |
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|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
32696583 |
aaaggagaaaaatcgcagtcattttacccttacagcagaaacatgtttgaatgcactgaactcaactcgctagaaaacgcagtcggagccggggttgctc |
32696484 |
T |
|
| Q |
218 |
gtcggcagccagaaacgatcataattttcccaacatcccatgactattggttcacctcttagaaatcaaaaggagccacacctttaggtttatatttagt |
317 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32696483 |
gtcggcagccagaaacgatcataattttcccaacaccccatgactattggttcacctcttagaaatcaaaaggagctacacctttaggtttatatttagt |
32696384 |
T |
|
| Q |
318 |
tttgataaatgaacaatatatgagcacagatttgggttcaccttcatccttaattttcaaaacctaataatcacaatcaatcttgcaaaatccataaaca |
417 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
32696383 |
tttgataaatgaacaatatatgagcacagatctgggttcaccttcatccttaattttcaaaacctaataatcacagtcaatcttgcaaaatccatgaaca |
32696284 |
T |
|
| Q |
418 |
ttctttaatatgttaattacagatttgggttgattaggattgagaagggtggagcttccaaggttcattgagaattgaaagggaagggagggagatgatg |
517 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32696283 |
ttctggaatatgttaattacagatttgggttgattaggattgagaagggtggagcttccaaggttcattgagaattgaaagggaagggagggagatgatg |
32696184 |
T |
|
| Q |
518 |
acgagagag |
526 |
Q |
| |
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||||||||| |
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| T |
32696183 |
acgagagag |
32696175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 22 - 526
Target Start/End: Complemental strand, 25420137 - 25419634
Alignment:
| Q |
22 |
catcaatccattaaactattgaacacccaaatcttctcctttttatattcagatctggccccataacaacaatactcagtagctccattttttcaaaacg |
121 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
25420137 |
catcaatccattaaactattgaacaaccaaatcttctcctttttatattcaaatctggccccataacaacaatactcagtagctcaattttttcaaaaag |
25420038 |
T |
|
| Q |
122 |
gagaaaaatcgcagtcgttttacccttacagcagaaacatgtttgaatgcactgaactcaactcgctagaaaatgcagtcggagccggagttgctcgtcg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| |||||||||||||||||||| |
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| T |
25420037 |
gagaaaaatcgcagtcgttttacccttacagcagaaacatgtttgaattcactgaactcaactcgctggaaaacgcagt-ggagccggagttgctcgtcg |
25419939 |
T |
|
| Q |
222 |
gcagccagaaacgatcataattttcccaacatcccatgactattggttcacctcttagaaatcaaaaggagccacacctttaggtttatatttagttttg |
321 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
25419938 |
gcagccagaaacgatcataatttttccaacatcccatgactattggttcacctcttagaaatcaagaggagctacacctttaggtttatatttagttttg |
25419839 |
T |
|
| Q |
322 |
ataaatgaacaatatatgagcacagatttgggttcaccttcatccttaattttcaaaacctaataatcacaatcaatcttgcaaaatccataaacattct |
421 |
Q |
| |
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|||||||||||||||||||||||| || ||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
25419838 |
ataaatgaacaatatatgagcacaaatctggattcaccttcatccttcattttcaaaacctaataatcacagtcaatcttgcaaaattcataaacattct |
25419739 |
T |
|
| Q |
422 |
ttaatatgttaattacagatttgggttgattaggattgagaagggtggagcttccaaggttcattgagaattgaaagggaagggagggagatgatgacga |
521 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25419738 |
tgaatatgttaattacagatttgggttgattaggattgagaagggtggagcttccaaggttcattgagaattgaaagggaagggagagagatgatgacga |
25419639 |
T |
|
| Q |
522 |
gagag |
526 |
Q |
| |
|
||||| |
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|
| T |
25419638 |
gagag |
25419634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 181
Target Start/End: Original strand, 31763092 - 31763127
Alignment:
| Q |
146 |
cttacagcagaaacatgtttgaatgcactgaactca |
181 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| |
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| T |
31763092 |
cttacagcagaaacaagtttgaatgcactgaactca |
31763127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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