View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16893_high_8 (Length: 386)
Name: NF16893_high_8
Description: NF16893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16893_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 6371174 - 6371217
Alignment:
| Q |
76 |
gaagatgatgatccacaaacggtgaagacagggttgagacagtg |
119 |
Q |
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| T |
6371174 |
gaagatgatgatccacaaacggtgaagacaaggttgagacagtg |
6371217 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 33222143 - 33222186
Alignment:
| Q |
76 |
gaagatgatgatccacaaacggtgaagacagggttgagacagtg |
119 |
Q |
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| T |
33222143 |
gaagatgatgatcaacaaacggtgaagacaaggttgatacagtg |
33222186 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 364
Target Start/End: Original strand, 20248673 - 20248705
Alignment:
| Q |
332 |
gtctaccttttcttctggatacaccatccttct |
364 |
Q |
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| T |
20248673 |
gtctaccttttcctctggatacaccatccttct |
20248705 |
T |
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