View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16893_high_9 (Length: 347)
Name: NF16893_high_9
Description: NF16893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16893_high_9 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0728 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 22 - 347
Target Start/End: Complemental strand, 30614243 - 30613917
Alignment:
| Q |
22 |
catcatcattacatgtttctgtttcgcggtctctgttattcttgtatatggacnnnnnnn-aaagaatactgtgcagagatttggttattaataaatttt |
120 |
Q |
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| T |
30614243 |
catcatcattacatgtttctgtttcgctgtctctgttattcttgtatagggactttttttcaaagaatattgcgcagagatttggttattaataaacttt |
30614144 |
T |
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| Q |
121 |
ttcgttaataaaacattaacaggtaggtgacgttcctcttcaggtttgttttcgtcggttatttgatttatcaaaaaataaatatgcaacatggtggcac |
220 |
Q |
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| T |
30614143 |
tctgttaataaaatattaacaggtaggcgacgttcctcttcaggttcgtttttgtcggttatttgatttatcagaaaataaatatgcaacacggtggcgc |
30614044 |
T |
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| Q |
221 |
aaatatttaacttgcggtgggacgaggggggaggcgtggaagtggagagaagtttacgggtgtgggaggaggagttggtagtaaaatgtaggttgttatt |
320 |
Q |
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| T |
30614043 |
aaatatttaacttggggtgggacgaggggggaggcgtggaagtggagagaagtttacgggtgtgggaggaggagttggtagtagaatgtaggttgttatt |
30613944 |
T |
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| Q |
321 |
attgtatgtggtgttgcaggttgatgt |
347 |
Q |
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| T |
30613943 |
attatatgtggtgttgcatattgatgt |
30613917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 25094807 - 25094760
Alignment:
| Q |
156 |
ctcttcaggtttgttttcgtcggttatttgatttatcaaaaaataaat |
203 |
Q |
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| T |
25094807 |
ctcttcaggtttgttttcgtcgcttatttattttatcagaaaataaat |
25094760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 347
Target Start/End: Original strand, 1426 - 1526
Alignment:
| Q |
248 |
ggggaggcgtggaagtggaga--gaagtttacgggtgtgggaggaggagttggtagtaaaatgtaggttgttattattgtatgtggtgttgcaggttgat |
345 |
Q |
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| T |
1426 |
ggggaggcatggaagtggagaaggaagtt-acgggcgtgggaggaggaaatgttagtggagtgtaggttgttattattgattgttgtgctgcaggttaat |
1524 |
T |
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| Q |
346 |
gt |
347 |
Q |
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| T |
1525 |
gt |
1526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 347
Target Start/End: Original strand, 6366 - 6466
Alignment:
| Q |
248 |
ggggaggcgtggaagtggaga--gaagtttacgggtgtgggaggaggagttggtagtaaaatgtaggttgttattattgtatgtggtgttgcaggttgat |
345 |
Q |
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| T |
6366 |
ggggaggcatggaagtggagaaggaagtt-acgggcgtgggaggaggaaatgttagtggagtgtaggttgttattattgattgttgtgctgcaggttaat |
6464 |
T |
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| Q |
346 |
gt |
347 |
Q |
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|| |
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| T |
6465 |
gt |
6466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 17620369 - 17620287
Alignment:
| Q |
238 |
tgggacgaggggg-gaggcgtggaagtggag-agaagtttacgggtgtgggaggaggagttggtagtaaaatgtaggttgtta |
318 |
Q |
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| T |
17620369 |
tgggacgagggggagaggcgtggaagtggaggaggaggttgtgggcgtgggagaaggagttggtagcagagtgtaggttgtta |
17620287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 13897252 - 13897204
Alignment:
| Q |
91 |
tgtgcagagatttggttattaataaattttttcgttaataaaacattaa |
139 |
Q |
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| T |
13897252 |
tgtgcagatatttagttattaataaattttatcgttaaaaaaatattaa |
13897204 |
T |
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