View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16894_high_13 (Length: 318)
Name: NF16894_high_13
Description: NF16894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16894_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 4534718 - 4535023
Alignment:
| Q |
1 |
atacttatgtattataagtagtataaatattttcaatttgctgctctgtaggttgcttttaataacggtattgatctcgctggaaaccccagcagaatga |
100 |
Q |
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| T |
4534718 |
atacttatgtactctatgtagtataaatatttataattggcttttctgtaggttgcttttaatcaccgtattgatctcgcaggaaactcctgcagaatga |
4534817 |
T |
|
| Q |
101 |
cgtcgatgatggacaagatctcgacctttccatccttagatgctcaacttattcattgctcaattttatttataaaaaatctgaatttatattcattgat |
200 |
Q |
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| T |
4534818 |
cgttgatgacagacaagatctcgacctttccatccttagatgctcaacttattcattgctcaattttatttataaaaaatctgaatttatattcattgat |
4534917 |
T |
|
| Q |
201 |
agttccattcatttcttttgtagtgacatttgaatcatcaagagatttttaatctattgttgagaagaacttttttgattagtttctcttttatctatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4534918 |
agttccattcatttcttttgtagtgacatttgaatcatcaagagatttttaatctattgttgagaagaacttttttgattagtttctcttttatctatgt |
4535017 |
T |
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| Q |
301 |
aatatt |
306 |
Q |
| |
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|||||| |
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| T |
4535018 |
aatatt |
4535023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 306
Target Start/End: Complemental strand, 24062043 - 24061896
Alignment:
| Q |
162 |
aattttatttataaaaaatctgaatttatattcattgatagtt-ccattcatttcttttgtagtgacatttgaatc-atcaagagatttttaatctattg |
259 |
Q |
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||||||||||| | |||| | |||||||||||||| ||| || ||||||||||||||| ||||| |||||| | | |||||||||| || ||||||||| |
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| T |
24062043 |
aattttatttactagaaatataaatttatattcattaatattttccattcatttcttttttagtggcatttggagccatcaagagatgttgaatctattg |
24061944 |
T |
|
| Q |
260 |
ttgagaagaac-ttttttgattagtttctcttttatctatgtaatatt |
306 |
Q |
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|||| || ||| |||||| |||||||| || ||||| ||||||||||| |
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| T |
24061943 |
ttgaaaaaaacttttttttattagtttatcgtttatttatgtaatatt |
24061896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 295
Target Start/End: Original strand, 3975660 - 3975751
Alignment:
| Q |
206 |
cattcatttcttttgtagtgacatttgaa-tcatcaagagatttttaatctattgttgagaag-aacttttttgattagtttctcttttatc |
295 |
Q |
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||||||||||||||||||| | |||| | | |||||||||| || ||||||||||||||||| || |||||||| || ||| ||||||||| |
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| T |
3975660 |
cattcatttcttttgtagttaactttggagttatcaagagatgttgaatctattgttgagaagtaatttttttgactactttatcttttatc |
3975751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 306
Target Start/End: Original strand, 48867392 - 48867420
Alignment:
| Q |
278 |
attagtttctcttttatctatgtaatatt |
306 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
48867392 |
attagtttctcttttatctatgtaatatt |
48867420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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