View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16894_high_15 (Length: 308)

Name: NF16894_high_15
Description: NF16894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16894_high_15
NF16894_high_15
[»] chr1 (2 HSPs)
chr1 (21-285)||(16126697-16126943)
chr1 (25-285)||(16137787-16138038)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 16126943 - 16126697
Alignment:
Q  21 acatcatcaaattgcactttttctagtgatttttcatcacaaggaaaaaatttggacaatagcatcatttgtgaagaccctgaagactcatttgtgacaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16126943 acatcatcaaattgcactttttctagtgatttttcatcacaaggaaaaaatttggacaatagcatcatttgtgaagaccctgaagactcatttgtgacaa 16126844  T
Q  121 tgcctcaaattgatgaaagcttttggtcagagacaatgactgatgatgaaactagttccaccatgccatcaaattctatgactatttcacctgaattacc 220  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||                  ||||||||||||||||||| |||||||||    
T  16126843 tgcctcaaattgatgaaagcttttggtcagagacaataactgatgatgaaact------------------aattctatgactatttcacatgaattacc 16126762  T
Q  221 aattcaagaatacccttttaataattcagtggaaaatttccaaaatccttttgatgatgatgatg 285  Q
    ||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||    
T  16126761 aattcaagaatacccttataataattcattggaaaatttccaaaacccttttgatgatgatgatg 16126697  T

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Target: chr1; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 25 - 285
Target Start/End: Complemental strand, 16138038 - 16137787
Alignment:
Q  25 catcaaattgcactttttctagtgatttttcatcacaaggaaaaaatttggacaatagcatcatttgtgaagaccctgaagactcatttgtgacaatgcc 124  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||         ||||| |||||||||||    
T  16138038 catcaaattgcactttttctagtgatttttcatcacaagaaaaaaatttggacaatagcatcatttgtgaagac---------tcattggtgacaatgcc 16137948  T
Q  125 tcaaattgatgaaagcttttggtcagagacaatgactgatgatgaaactagttccaccatgccatcaaattctatgactatttcacctgaattaccaatt 224  Q
    | ||||||||||||||||||||||||||||| | | ||||||||||| ||||||||||||||||||||||||||||||  |||||  ||| ||||||  |    
T  16137947 tgaaattgatgaaagcttttggtcagagacagtaattgatgatgaaattagttccaccatgccatcaaattctatgacagtttcaaatgatttaccagat 16137848  T
Q  225 caagaatacccttttaataattcagtggaaaatttccaaaatccttttgatgatgatgatg 285  Q
    ||| ||| |  |||||||||||| ||||||||||| ||||| ||||||||| |||||||||    
T  16137847 caacaatgcatttttaataattccgtggaaaattttcaaaacccttttgataatgatgatg 16137787  T

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