View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16894_high_16 (Length: 303)
Name: NF16894_high_16
Description: NF16894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16894_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 45566874 - 45567130
Alignment:
| Q |
18 |
gtgttctgataatctgaaaatattggcagctatactttataaacagaatagaaagtgt-ttatttgttaatttttatgcaaagcgttactttcaaatgta |
116 |
Q |
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| T |
45566874 |
gtgttctgataatctgaaaatattggcagctatactttataaacagaatagaaagtgtgttatttgttaatttttatgcaaagcgttactttcaaatgta |
45566973 |
T |
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| Q |
117 |
ttcaccaaaatattttgtttcggtgaattacacttggacccttgttcagaaagtttgaaaattcaaacatctggtttaagtttaaactttcattccacta |
216 |
Q |
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| T |
45566974 |
ttcaccaaaatattttgtttcggtgaattacacttg-acccttgttcagaaagtttgaaaattcagacatctggtttaagtttaaactttcattccacta |
45567072 |
T |
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| Q |
217 |
gttattacacgtttctacagtatttactaattagcttactgtccaatttggtgtcctt |
274 |
Q |
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| T |
45567073 |
gttattacacgtttctacagtatgtactaattagcttactgtccaatttggtgtcctt |
45567130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 170 - 274
Target Start/End: Original strand, 45091402 - 45091506
Alignment:
| Q |
170 |
tttgaaaattcaaacatctggtttaagtttaaactttcattccactagttattacacgtttctacagtatttactaattagcttactgtccaatttggtg |
269 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||| ||| ||||||| |||||||| |||||| ||||||||||||||||||| || ||| |
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| T |
45091402 |
tttggaaattcaaacatttggtttaagtttaaactttcattccaccagtaattacacatttctacaatatttattaattagcttactgtccaaattagtg |
45091501 |
T |
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| Q |
270 |
tcctt |
274 |
Q |
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||||| |
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| T |
45091502 |
tcctt |
45091506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 45085613 - 45085669
Alignment:
| Q |
213 |
actagttattacacgtttctacagtatttactaattagcttactgtccaatttggtg |
269 |
Q |
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|||||| |||||| |||||||| |||||||||||||||||| | || ||||||||| |
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| T |
45085613 |
actagtaattacatatttctacattatttactaattagcttaatttcaaatttggtg |
45085669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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