View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16894_high_2 (Length: 460)
Name: NF16894_high_2
Description: NF16894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16894_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 22 - 398
Target Start/End: Complemental strand, 8092407 - 8092032
Alignment:
| Q |
22 |
tcatcaacacattaaaggtagcacacatagctaaataagctaatgtttggacaacattacattttgagagtacataaatcaagagtgttttagcaaacca |
121 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||| |
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| T |
8092407 |
tcatcaacacattaaaggtatcacacatagctaaataaactaatgtttggacaacattatattttgagggtacataaatcaagagtggtttagcaaacca |
8092308 |
T |
|
| Q |
122 |
atatctaaaacctatcacccaaaccaatttcttccgcaagtggtcattgacaaaggagcagagaagatcaacagtcttttttatctatccaattaaggat |
221 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
8092307 |
atatctaaaacttatcacccaaaccaatttcttccgcaagtggtcattgacaaaggagaagagaagatcaacagtcttttc-atctatccaattaaggat |
8092209 |
T |
|
| Q |
222 |
catttctttgacttttgcaagcacatatcgacaatatgtggtcttgaaattagtcaaactcaccataaatttggaattcatttgtttggttgagaagata |
321 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| || | |
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| T |
8092208 |
catttctttgacttttgcaagcacatatcgactatatgtggtctcaaaattagtcaaactcaccacaaattcggaattcatttgtttggttgagatgaga |
8092109 |
T |
|
| Q |
322 |
tagagattgttggcagccactttcaaatctgcacacataactctagtccaaaaagtccagcaccattgaggcatttt |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8092108 |
tagagattgttggcagccactttcaaatctgcacacataactctagtccaaaaagtccagcaccattgaggcatttt |
8092032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 22 - 398
Target Start/End: Complemental strand, 2334920 - 2334545
Alignment:
| Q |
22 |
tcatcaacacattaaaggtagcacacatagctaaataagctaatgtttggacaacattacattttgagagtacataaatcaagagtgttttagcaaacca |
121 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
2334920 |
tcatcaacacattaaaggtagcacacctagctaaataagctaatgcttggacaacattacattttgagagtacataaatcaagagtggttcagcaaacca |
2334821 |
T |
|
| Q |
122 |
atatctaaaacctatcacccaaaccaatttcttccgcaagtggtcattgacaaaggagcagagaagatcaacagtcttttttatctatccaattaaggat |
221 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||| || |||||||| ||||||| |||||||||| |
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| T |
2334820 |
atatctaaaacctatcacccaaaccaatttcttcctcaagtgatcattgacaaaggagaagagaagatccacggtcttttt-atctatctaattaaggat |
2334722 |
T |
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| Q |
222 |
catttctttgacttttgcaagcacatatcgacaatatgtggtcttgaaattagtcaaactcaccataaatttggaattcatttgtttggttgagaagata |
321 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| | |
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| T |
2334721 |
catttctttgacttttacaagcacatatcgactatatgtggtctcgaaattagtcaaactcaccacaaatttggaatccatttgtttggttgagaagaga |
2334622 |
T |
|
| Q |
322 |
tagagattgttggcagccactttcaaatctgcacacataactctagtccaaaaagtccagcaccattgaggcatttt |
398 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2334621 |
tagagattgttggcaaccactttcaaatatgcacacataactctagtccaaaaagtccagcaccattgaggcatttt |
2334545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 121 - 398
Target Start/End: Complemental strand, 17037737 - 17037461
Alignment:
| Q |
121 |
aatatctaaaacctatcacccaaaccaatttcttccgcaagtggtcattgacaaaggagcagagaagatcaacagtcttttttatctatccaattaagga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||| || |||||||| ||||||||||||||||| |
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| T |
17037737 |
aatatctaaaacctatcacccaaaccaatttcttcctcaagtgatcattgacaaaggagaagagaagatccacggtcttttt-atctatccaattaagga |
17037639 |
T |
|
| Q |
221 |
tcatttctttgacttttgcaagcacatatcgacaatatgtggtcttgaaattagtcaaactcaccataaatttggaattcatttgtttggttgagaagat |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
17037638 |
tcatttctttgacttttgcaagcacatatcgactatatgtggtctcgaaattagtcaaactcaccacaaatttggaatccatttgtttggttgagaagag |
17037539 |
T |
|
| Q |
321 |
atagagattgttggcagccactttcaaatctgcacacataactctagtccaaaaagtccagcaccattgaggcatttt |
398 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17037538 |
atagagattgttggcagccactttcaaatatgcacacataactctagtccaaaaagtccagcaccattgaggcatttt |
17037461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 49186711 - 49186570
Alignment:
| Q |
22 |
tcatcaacacattaaaggtagcacacatagctaaataagctaatgtttggacaacattacattttgagagtacataaatcaagagtgttttagcaaacca |
121 |
Q |
| |
|
||||||| ||||||||||| |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||| |
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| T |
49186711 |
tcatcaatacattaaaggttgcacacctagcgaaataagctaatgtttggacaacatcacattttgagagtacataaatcaagagtggttcagcaaacca |
49186612 |
T |
|
| Q |
122 |
atatctaaaacctatcacccaaaccaatttcttccgcaagtg |
163 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||| |||||| |
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| T |
49186611 |
atatctaaaatctatcacccaaatcaatttcttcctcaagtg |
49186570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 133; Significance: 6e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 27580946 - 27580766
Alignment:
| Q |
22 |
tcatcaacacattaaaggtagcacacatagctaaataagctaatgtttggacaacattacattttgagagtacataaatcaagagtgttttagcaaacca |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||| | |
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| T |
27580946 |
tcatcaacacattaaaggtagcacacatagctaaataagctaatgcttggacaacattacattttgagagtacttaaatcaagagtggtttagcaaacta |
27580847 |
T |
|
| Q |
122 |
atatctaaaacctatcacccaaaccaatttcttccgcaagtggtcattgacaaaggagcagagaagatcaacagtcttttt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| || | ||||||| ||||||||||| |
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|
| T |
27580846 |
atatctaaaacctatcacccaaaccaatttcttccgcaagtgaatattgacaaagtagaacagaagattcacagtcttttt |
27580766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 207 - 344
Target Start/End: Complemental strand, 27580493 - 27580356
Alignment:
| Q |
207 |
tatccaattaaggatcatttctttgacttttgcaagcacatatcgacaatatgtggtcttgaaattagtcaaactcaccataaatttggaattcatttgt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |
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| T |
27580493 |
tatccaattaaggatcatttctttgacttttgcaagcacatatcgactatatgtggtcttgagattagtcaaactcaccacaaatttggaatccatttgt |
27580394 |
T |
|
| Q |
307 |
ttggttgagaagatatagagattgttggcagccacttt |
344 |
Q |
| |
|
|||| ||||||| ||||||||| |||||||||||||| |
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| T |
27580393 |
ttggctgagaagtgatagagatttttggcagccacttt |
27580356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 28 - 151
Target Start/End: Original strand, 38987215 - 38987333
Alignment:
| Q |
28 |
acacattaaaggtagcacacatagctaaataagctaatgtttggacaacattacattttgagagtacataaatcaagagtgttttagcaaaccaatatct |
127 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| ||||||| || |||||||||||||||||||||||||| | |||| ||||||||||||| |
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|
| T |
38987215 |
acacattaaagatagcgcacatagctaaataagctaaagtttggataatattacattttgagagtacataaatca-----ggtttaccaaaccaatatct |
38987309 |
T |
|
| Q |
128 |
aaaacctatcacccaaaccaattt |
151 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
38987310 |
taaatctatcacccaaaccaattt |
38987333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 28 - 151
Target Start/End: Original strand, 39018312 - 39018430
Alignment:
| Q |
28 |
acacattaaaggtagcacacatagctaaataagctaatgtttggacaacattacattttgagagtacataaatcaagagtgttttagcaaaccaatatct |
127 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| ||||||| || |||||||||||||||||||||||||| | |||| ||||||||||||| |
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|
| T |
39018312 |
acacattaaagatagcgcacatagctaaataagctaaagtttggataatattacattttgagagtacataaatca-----ggtttaccaaaccaatatct |
39018406 |
T |
|
| Q |
128 |
aaaacctatcacccaaaccaattt |
151 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
39018407 |
taaatctatcacccaaaccaattt |
39018430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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