View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16894_high_5 (Length: 390)
Name: NF16894_high_5
Description: NF16894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16894_high_5 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 39984920 - 39984552
Alignment:
| Q |
1 |
atgacaagggtagactttctaaggaagatattgagaagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaaggtcgaggc |
100 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| |
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|
| T |
39984920 |
atgacaagggtagactttcaaaggaagacattgagaagatggttcaagaggcagagaagtacaagtcggaagatgaagagcataagaagaaggtcgaggc |
39984821 |
T |
|
| Q |
101 |
caagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgag |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||||| |||||||| ||| |
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|
| T |
39984820 |
caagaatgcattggaaaactatgcatacaacatgaggaacaccattaaggatgaaaaaattgcaggaaagcttgattcggatgacaaaaagaagatcgag |
39984721 |
T |
|
| Q |
201 |
gacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaacc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| | ||| |||||||||||| |
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|
| T |
39984720 |
gacaccattgaggctgctatccagtggctagatgccaaccagcttgcagaggctgatgagtttgaggacaagatgaaggaacttgaaggtgtctgcaacc |
39984621 |
T |
|
| Q |
301 |
ctatcattgccaagatgtaccaaggtggtgcaggtcctgacatgggcgctgcagcagatgatgatgatg |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| | | ||||||||||| |
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|
| T |
39984620 |
ctatcattgccaagatgtaccaaggtggtgcaggtcctgacatgggtgctgctcccggtgatgatgatg |
39984552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 8018307 - 8018634
Alignment:
| Q |
1 |
atgacaagggtagactttctaaggaagatattgagaagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaaggtcgaggc |
100 |
Q |
| |
|
||||||| ||||| | ||||||||||| ||||||||||||||| | || ||||| || |||||| | || || || ||||| || |||||||| || || |
|
|
| T |
8018307 |
atgacaaaggtaggttgtctaaggaagaaattgagaagatggttgaggaagcagaaaaatacaaggctgaagacgaggaacacaaaaagaaggttgatgc |
8018406 |
T |
|
| Q |
101 |
caagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgag |
200 |
Q |
| |
|
|||||||| |||||||| || || ||||||||||||||||||||||| || || ||||||| ||||||| | || ||||| ||||||||||| |
|
|
| T |
8018407 |
aaagaatgctttggaaaactacgcttacaacatgaggaacacaattaaagacgagaagattggttcaaagctttcacctgaggacaaaaagaagattgat |
8018506 |
T |
|
| Q |
201 |
gacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaacc |
300 |
Q |
| |
|
|| | ||||| ||||| || |||||| | || ||||||| | |||||||| ||||||||||| || |||||||||||| | || || | ||||||| |
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|
| T |
8018507 |
gatgcaattgacgctgcaattcagtggttggacagtaaccagttggcagaggctgatgagtttgaagataagatgaaggaacttgagagcctttgcaacc |
8018606 |
T |
|
| Q |
301 |
ctatcattgccaagatgtaccaaggtgg |
328 |
Q |
| |
|
| ||||||||||||||||| |||||||| |
|
|
| T |
8018607 |
caatcattgccaagatgtatcaaggtgg |
8018634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 328
Target Start/End: Complemental strand, 8101921 - 8101614
Alignment:
| Q |
21 |
aaggaagatattgagaagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaaggtcgaggccaagaatgcattggaaaatt |
120 |
Q |
| |
|
|||||||| || ||||||||||| ||||| |||||||| |||||| || ||||| || || ||||||||||| ||||| ||||| | ||||| || | |
|
|
| T |
8101921 |
aaggaagaaatcgagaagatggtccaagaagcagagaaatacaagagtgaagatgaggagcacaagaagaaggttgaggcaaagaactccttggagaact |
8101822 |
T |
|
| Q |
121 |
atgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgaggacaccattgaggctgctat |
220 |
Q |
| |
|
|||||||||||||||| ||||| ||||| || || ||||| ||||||| | ||||||||| |||||||||| | ||||||| || || |
|
|
| T |
8101821 |
atgcatacaacatgagaaacaccattaaagacgagaagatcagttcaaagctttcaggaggagacaagaagcagattgaggatgcaattgagggagccat |
8101722 |
T |
|
| Q |
221 |
ccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgtac |
320 |
Q |
| |
|
|| ||||| ||||| ||||||||||| || || ||||||||||| |||||||||||||| | || | |||| ||||| |||||||| ||||||||| |
|
|
| T |
8101721 |
tcaatggcttgatgcaaaccagcttgctgaagccgatgagtttgaagacaagatgaaggagcttgagacaatctgtaacccaatcattgcaaagatgtac |
8101622 |
T |
|
| Q |
321 |
caaggtgg |
328 |
Q |
| |
|
|||||||| |
|
|
| T |
8101621 |
caaggtgg |
8101614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 17649211 - 17649568
Alignment:
| Q |
1 |
atgacaagggtagactttctaaggaagatattgagaagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaaggtcgaggc |
100 |
Q |
| |
|
||||||||||||||||||| |||||| | |||||||||||||||| ||||||||||||||||||||| || |||||||| |||||| || || ||| |
|
|
| T |
17649211 |
atgacaagggtagactttcaaaggaaaacattgagaagatggttcgagaggcagagaagtacaagtcggaagatgaagagcataagtag---gttaagga |
17649307 |
T |
|
| Q |
101 |
caagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgag |
200 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||| ||||| ||||| ||||||||| |||||||||||||| | |||||||||| ||||| |
|
|
| T |
17649308 |
caagaatgcattggaaaactat----acaacatgaggaacaccattaatgatgaaaagattgcatgaaagcttgattccaaagacaagaaga---ttgag |
17649400 |
T |
|
| Q |
201 |
gacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||| | ||||||||||||||||||| |||||||||||| | | ||||| |||||| |
|
|
| T |
17649401 |
gacaccattgaggctgctatccagtggctagaccc-aaccagcttgaataggcagatgagtttgaggataagatgaaggaaccgcgaggtgtcggcaacc |
17649499 |
T |
|
| Q |
301 |
ctatcattgccaagatgtaccaaggtggtgcaggtcctgacatgggcgctgcagcagatgatgatgatg |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| || || ||| ||||||||||| |
|
|
| T |
17649500 |
ctatcattgccaagatgtaccaaggtggtgcaggtcttgacatggatgccgctccaggtgatgatgatg |
17649568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 17706577 - 17706911
Alignment:
| Q |
1 |
atgacaagggtagactttctaaggaagatattgagaagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaaggtcgaggc |
100 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||||||||||| |||| |||||| ||||||||||| || || | | |||| ||| ||| |||| ||||| |
|
|
| T |
17706577 |
atgacaagggaagactttcaaaggaagtcattgagaagatagttcgagaggcggagaagtacaactcagaagtttaagagcat---aaggaggttgaggc |
17706673 |
T |
|
| Q |
101 |
caagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgag |
200 |
Q |
| |
|
||||||||| ||||||| | |||||||| |||| |||| ||||||||||| |||||||||||||||||||||||| | ||| ||||| |||||| |
|
|
| T |
17706674 |
caagaatgctatggaaaact----atacaacacgagggacaccattaaggatgaaaagattgcaggaaagcttgattccaaagac---aagaaaattgag |
17706766 |
T |
|
| Q |
201 |
gacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaacc |
300 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| || || |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
17706767 |
gacaccattgaggctactatccggtggctagacgccaatcagcttgcagaggcagatgagtttgaggacaagatgaaggaaccagaaggtgtctgcaacc |
17706866 |
T |
|
| Q |
301 |
ctatcattgccaagatgtaccaaggtggtgcaggtcctgacatgg |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| || ||||| |
|
|
| T |
17706867 |
ctatcattgccaagatgtaccaaggtggtgctggtcttggcatgg |
17706911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 17722080 - 17722122
Alignment:
| Q |
72 |
gatgaagaacataagaagaaggtcgaggccaagaatgcattgg |
114 |
Q |
| |
|
|||||||| ||||||||| |||| ||||||||||||||||||| |
|
|
| T |
17722080 |
gatgaagagcataagaaggaggttgaggccaagaatgcattgg |
17722122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 23588627 - 23588953
Alignment:
| Q |
1 |
atgacaagggtagactttctaaggaagatattgagaagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaaggtcgaggc |
100 |
Q |
| |
|
||||||||||||| || || |||||||| |||||||||||||| || || || || ||||||||||| ||||| || || || || ||||| || ||||| |
|
|
| T |
23588627 |
atgacaagggtaggctctccaaggaagaaattgagaagatggtgcaggaagctgaaaagtacaagtctgaggacgaggagcacaaaaagaaagtggaggc |
23588726 |
T |
|
| Q |
101 |
caagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgag |
200 |
Q |
| |
|
|||||||||| | || || ||||| |||||||||||||||||||| || || ||||||||||| ||| | | | ||||| |||||||| ||||| |
|
|
| T |
23588727 |
caagaatgcacttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtctgctgatgataagaagaaaattgaa |
23588826 |
T |
|
| Q |
201 |
gacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaacc |
300 |
Q |
| |
|
|| | ||||||| ||||| || ||| | |||| || || |||| |||||| ||||| |||||||||||||||||||| |||| | | ||||||| |
|
|
| T |
23588827 |
gatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatttgcaacc |
23588926 |
T |
|
| Q |
301 |
ctatcattgccaagatgtaccaaggtg |
327 |
Q |
| |
|
|||||||||| | |||||| ||||||| |
|
|
| T |
23588927 |
ctatcattgcaaggatgtatcaaggtg |
23588953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 23597479 - 23597805
Alignment:
| Q |
1 |
atgacaagggtagactttctaaggaagatattgagaagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaaggtcgaggc |
100 |
Q |
| |
|
||||||||||||| || || ||||| || |||||||| ||||| || || || || |||||||| ||||||||||| || || || | |||||| ||||| |
|
|
| T |
23597479 |
atgacaagggtaggctctccaaggaggacattgagaaaatggtgcaggaagcggaaaagtacaaatccgaggatgaggagcacaaaaggaaggtggaggc |
23597578 |
T |
|
| Q |
101 |
caagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgag |
200 |
Q |
| |
|
||| ||||| | || || ||||| |||||||||||||||||||| || || ||||||||||| ||| | | ||||| |||||||| ||||| |
|
|
| T |
23597579 |
caaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataagaagaaaattgaa |
23597678 |
T |
|
| Q |
201 |
gacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaacc |
300 |
Q |
| |
|
|| | ||||||| ||||| || ||| | |||| || || |||| |||||| ||||| |||||||||||||||||||| |||| || | ||||||| |
|
|
| T |
23597679 |
gatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaacc |
23597778 |
T |
|
| Q |
301 |
ctatcattgccaagatgtaccaaggtg |
327 |
Q |
| |
|
|||||||||| | |||||| ||||||| |
|
|
| T |
23597779 |
ctatcattgcaaggatgtatcaaggtg |
23597805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 54395677 - 54395536
Alignment:
| Q |
21 |
aaggaagatattgagaagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaaggtcgaggccaagaatgcattggaaaatt |
120 |
Q |
| |
|
|||||||| || ||||||||||| |||| ||||||||||| ||| | ||||||||||| |||||||| || ||||| |||||| || | || |||| |
|
|
| T |
54395677 |
aaggaagagatagagaagatggtgaaagatgcagagaagtataaggcagaggatgaagaggtgaagaagaaagtggaggcgaagaattcaattgagaatt |
54395578 |
T |
|
| Q |
121 |
atgcatacaacatgaggaacacaattaaggatgacaagattg |
162 |
Q |
| |
|
|||| || || |||||||| |||||||||||||| ||||||| |
|
|
| T |
54395577 |
atgcttataatatgaggaatacaattaaggatgagaagattg |
54395536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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