View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16895_low_1 (Length: 407)
Name: NF16895_low_1
Description: NF16895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16895_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 21 - 395
Target Start/End: Original strand, 48684254 - 48684628
Alignment:
| Q |
21 |
gatttcaactaagttggtattaaagaaagtgctaatcaattcttgcacccctaaatattattaaaaagagatcagcaaaactcataattggaaagactat |
120 |
Q |
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| T |
48684254 |
gatttcaactaagttggtattaaagaaagtgctaatcaattcttgcacccctaaatattattaaaaagagatcagcaaaactcataattggaaagactat |
48684353 |
T |
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| Q |
121 |
ttttatttcgaaaaaagtcttcactaattcaaatgatacacatcattgtcattatagattagtcctgattacttaagggtggcaacacctttnnnnnnnc |
220 |
Q |
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| T |
48684354 |
ttttatttcgaaaaaagtcttcactaattcaaatgatacacatcattgtcattatagattagtcctgattacttaagggtggcaacacctttaaaaaaac |
48684453 |
T |
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| Q |
221 |
acatgtaaaacaaggtattaatttaaattgactgaaccaaaagtttggatcttctctagaactaaaagagataatatctccaataatgaagagaatccaa |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48684454 |
acatgtaaaacaaggtattaatttaaattgactgaaccaaaagtttggatcttctctaggactaaaagagataatatctccaataatgaagagaatccaa |
48684553 |
T |
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| Q |
321 |
attagataagcaaagacagagggtacttatggtatttaacaattattgatgttttggtatcttgtctgtgagtat |
395 |
Q |
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| T |
48684554 |
attagataagcaaagacagagggtacttatggtatttaacaattattgatgttttggtatcttgtctgtgagtat |
48684628 |
T |
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