View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16895_low_2 (Length: 321)
Name: NF16895_low_2
Description: NF16895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16895_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 136 - 316
Target Start/End: Original strand, 38186819 - 38186999
Alignment:
| Q |
136 |
cttaccatcgagggtaaaatgtttggtgaaaggggtacgggggagaaggaaaattttgcatagagaaataatccaaaggaaaatgaaagaagcgattatg |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38186819 |
cttaccatcgagggtaaaatgtttggtgaaaggggtacgggggagaaggaaaattttgcatagagaaataatccaaaggaaaatgaaagaagcgattatg |
38186918 |
T |
|
| Q |
236 |
agaatcaaggccatgaaggttgaaattcaaacaccaattcaatgattagggctcaaaatgaattgtttttattcatctcag |
316 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38186919 |
agaatcaaggccatgaaggttgaaattgaaacaccaattcaatgattagtgctcaaaatgaattgtttttattcatctcag |
38186999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 38186692 - 38186733
Alignment:
| Q |
10 |
catcatcagggtgagcaataaccagcaagacatttctcttcc |
51 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38186692 |
catcgtcagggtgagcaataaccagcaagacatttctcttcc |
38186733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University