View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16896_high_10 (Length: 334)
Name: NF16896_high_10
Description: NF16896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16896_high_10 |
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| [»] chr5 (14 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-175; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 21 - 334
Target Start/End: Original strand, 28080547 - 28080860
Alignment:
| Q |
21 |
acatcatcattgatgacattgttatctactgcataatcagaaacatgatgcaattgtagagttggtgtcccttgataggataagtgtggatacaaattct |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28080547 |
acatcatcattgatgacattgttatctactgcataatcagaaacatgatgcaattgtagagttggtgtcccttgataggataagtgtggatacaaattct |
28080646 |
T |
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| Q |
121 |
tgttgccaatactcatcatattcgagtgttgagaaatatcaatgagaggatcaaccggaaaattgatagtacctgtagaatcattcatatgaagtaacga |
220 |
Q |
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| T |
28080647 |
tgttgccaatactcatcatattcgagtgttgagaaatatcaatgagaggatcaaccggaaaattgatagtacctgtagaatcattcatatgaagtaacga |
28080746 |
T |
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| Q |
221 |
tcgctggtcaaaagattggcaatgtcttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtcttgaactgttg |
320 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28080747 |
tcgctggtcaaaagatcggcaatgtcttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtcttgaactgttg |
28080846 |
T |
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| Q |
321 |
aaaaaatgattaga |
334 |
Q |
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|||||||||||||| |
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| T |
28080847 |
aaaaaatgattaga |
28080860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 219 - 334
Target Start/End: Original strand, 28080871 - 28080986
Alignment:
| Q |
219 |
gatcgctggtcaaaagattggcaatgtcttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtcttgaactgt |
318 |
Q |
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| T |
28080871 |
gatcgctggtcaaaagattggcgatgtcttgaactgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattggcgatgtcttgaactgt |
28080970 |
T |
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| Q |
319 |
tgaaaaaatgattaga |
334 |
Q |
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|||| ||||||||||| |
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| T |
28080971 |
tgaacaaatgattaga |
28080986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 215 - 334
Target Start/End: Original strand, 28080804 - 28080923
Alignment:
| Q |
215 |
taacgatcgctggtcaaaagattggcaatgtcttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtcttgaa |
314 |
Q |
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||||||| |||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||| ||||| |||||||||| |
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| T |
28080804 |
taacgattgctgttcaaaaggttggcaatgtcttgaactgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattggcgatgtcttgaa |
28080903 |
T |
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| Q |
315 |
ctgttgaaaaaatgattaga |
334 |
Q |
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|||||||| ||||||||||| |
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| T |
28080904 |
ctgttgaacaaatgattaga |
28080923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 219 - 310
Target Start/End: Original strand, 28080934 - 28081025
Alignment:
| Q |
219 |
gatcgctggtcaaaagattggcaatgtcttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct |
310 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| || ||||||||| |||||||||||| |
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| T |
28080934 |
gatcgctggtcaaaagattggcgatgtcttgaactgttgaacaaatgattagatgatgataatgatcgcagttcaaaagattggcaatgtct |
28081025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 27931083 - 27931024
Alignment:
| Q |
247 |
ttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaat |
306 |
Q |
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| T |
27931083 |
ttgaactgttgaacaaatgattagatgatgataatgatcgttggtcaaaagattggcaat |
27931024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 27930058 - 27930000
Alignment:
| Q |
252 |
ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct |
310 |
Q |
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||||||||||||||||||||||||||||| ||| |||| ||||||| ||| |||||||| |
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| T |
27930058 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct |
27930000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 27930262 - 27930204
Alignment:
| Q |
252 |
ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct |
310 |
Q |
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|||| |||||||| ||||||||||||||| |||||||| ||||||| |||||||||||| |
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| T |
27930262 |
ctgtcgaacaaataattagatgatgataatgattgctggtcaaaagattggcaatgtct |
27930204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 27930466 - 27930408
Alignment:
| Q |
252 |
ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct |
310 |
Q |
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| T |
27930466 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct |
27930408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 27930670 - 27930612
Alignment:
| Q |
252 |
ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct |
310 |
Q |
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||||||||||||||||||||||||||||| ||| |||| ||||||| ||| |||||||| |
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| T |
27930670 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct |
27930612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 28081171 - 28081229
Alignment:
| Q |
252 |
ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct |
310 |
Q |
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||||||||||||||||||||||||||||| ||| |||| ||||||| ||| |||||||| |
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| T |
28081171 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct |
28081229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 28081375 - 28081433
Alignment:
| Q |
252 |
ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct |
310 |
Q |
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||||||||||||||||||||||||||||| ||| |||| ||||||| ||| |||||||| |
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| T |
28081375 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct |
28081433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 28081579 - 28081637
Alignment:
| Q |
252 |
ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct |
310 |
Q |
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||||||||||||||||||||||||||||| ||| |||| ||||||| ||| |||||||| |
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| T |
28081579 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct |
28081637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 28081783 - 28081841
Alignment:
| Q |
252 |
ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct |
310 |
Q |
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||||||||||||||||||||||||||||| ||| |||| ||||||| ||| |||||||| |
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| T |
28081783 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct |
28081841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 27930874 - 27930816
Alignment:
| Q |
252 |
ctgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct |
310 |
Q |
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||||||||||||||||||||||||||||| ||| | || ||||||| ||| |||||||| |
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| T |
27930874 |
ctgttgaacaaatgattagatgatgataatgatcgttggtcaaaagattgacaatgtct |
27930816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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