View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16896_high_17 (Length: 304)
Name: NF16896_high_17
Description: NF16896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16896_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 9123426 - 9123166
Alignment:
| Q |
13 |
agaacctgtgtggtcattcattgcaagattgcaacaagttgaatccattgaagacatttgtagggttggttctaaaggatgagataatgggagttacaga |
112 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
9123426 |
agaatctgtgcggtcattcattgcaagattgcaacaagttgaatccattgaagacatttgtagggttggttctaaaggatgatattatgggagttacaga |
9123327 |
T |
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| Q |
113 |
tttgaacgaggagaaatttcttagcagagattgggaagaaggagaaattatcattctcgattaattagctttttatcgataggaatgattgcagctgatt |
212 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
9123326 |
tttgaatgaggagaaatttcttaacagagattgggaagaaggagaaattatcattctcgattaattagctttttatatttaggaatgactgcagctgatt |
9123227 |
T |
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| Q |
213 |
gtaatgcatgtattataggaaggaactgtcatgtaagaaattatattcatattcaatatatat |
275 |
Q |
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| T |
9123226 |
gtaatgtat-tatcaaaggaaggaact-tcatgtaagaatttatattcatattcaatatatat |
9123166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 9131533 - 9131273
Alignment:
| Q |
13 |
agaacctgtgtggtcattcattgcaagattgcaacaagttgaatccattgaagacatttgtagggttggttctaaaggatgagataatgggagttacaga |
112 |
Q |
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| T |
9131533 |
agaatctgtgcggtcattcattgcaagattgcaacaagttgaatccattgaagacatttgtagggttggttctaaaggatgatattatgggagttacaga |
9131434 |
T |
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| Q |
113 |
tttgaacgaggagaaatttcttagcagagattgggaagaaggagaaattatcattctcgattaattagctttttatcgataggaatgattgcagctgatt |
212 |
Q |
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| T |
9131433 |
tttgaatgaggagaaatttcttaacagagattgggaagaaggagaaattatcattctcgattaattagctttttatatttaggaatgactgcagctgatt |
9131334 |
T |
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| Q |
213 |
gtaatgcatgtattataggaaggaactgtcatgtaagaaattatattcatattcaatatatat |
275 |
Q |
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| T |
9131333 |
gtaatgtat-tatcaaaggaaggaact-tcatgtaagaatttatattcatattcaatatatat |
9131273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 24525294 - 24525030
Alignment:
| Q |
13 |
agaacctgtgtggtcattcattgcaagattgcaacaagttgaatccattgaagacatttgtagggttggttctaaaggatgagataatgggagttacaga |
112 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || |
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| T |
24525294 |
agaatctgtgcggtcattcattgcaagattgcaacaagttgaatccattgaagacatttgtagggttggttctaaaggatgagattatgggagtgaatga |
24525195 |
T |
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| Q |
113 |
tttgaacgaggagaaatttcttagcagagattgggaagaaggagaaattatcattctcgattaattagctttttatcgataggaatgattgcagctgatt |
212 |
Q |
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|||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| |
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| T |
24525194 |
tttgaatgaggagaagtttcttaacagagattgggaagatggagaaattatcattctcgattaattagctttttatctttaggaatgattgtagctaatt |
24525095 |
T |
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| Q |
213 |
gtaatgcatgtatt---ataggaaggaactgtcatgtaagaaattatattcatattcaatatatat |
275 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24525094 |
acaatgcatgtattatcataggaaggaact-tcatgtaagaaattatattcatattcaatatatat |
24525030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 68 - 205
Target Start/End: Original strand, 9038960 - 9039096
Alignment:
| Q |
68 |
atttgtagggttggttctaaaggatgagataatgggagttacagatttgaacgaggagaaatttcttagcagagattgggaagaaggagaaattatcatt |
167 |
Q |
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|||||| ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
9038960 |
atttgtggggttggttttaaaggatgagattatgggagtgacagatttgaacgaggagaaatttcttaacaga-attgggaagaaggagaaattatcatt |
9039058 |
T |
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| Q |
168 |
ctcgattaattagctttttatcgataggaatgattgca |
205 |
Q |
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||||||||||||| |||||||| ||||||||| |||| |
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| T |
9039059 |
ctcgattaattagttttttatctttaggaatgactgca |
9039096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 39815109 - 39815150
Alignment:
| Q |
147 |
gaagaaggagaaattatcattctcgattaattagctttttat |
188 |
Q |
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| T |
39815109 |
gaagaaggagaagttatcattctcgattaattagctttttat |
39815150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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