View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16896_high_3 (Length: 455)
Name: NF16896_high_3
Description: NF16896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16896_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 31 - 433
Target Start/End: Original strand, 15477486 - 15477892
Alignment:
| Q |
31 |
taaatcatgtggacaaaataacattttgaacgtgttgtctaaggaaaacaacacaatgatttatgatttgaagagtgttgttggcgtaagcaatgatgtt |
130 |
Q |
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| T |
15477486 |
taaatcatgtggacaaaataacattttgaacgtgttgtctaaggaaaacaacacaatgatttatgatttgaagagtgttgttggcgtaagcaatgatgtt |
15477585 |
T |
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| Q |
131 |
tgaggtgacgagaaaataaatttagacttgagcatttaatttaatcttatta----ttaannnnnnnnngtggtggcagaattaaatcttaatttattta |
226 |
Q |
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| T |
15477586 |
tgaggtgacgagaaaataaatttagacttgagcatttaatttaatcttattattttttattttttttttgtggtggcagaattaaatcttaatttattta |
15477685 |
T |
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| Q |
227 |
aaaagaaaaatactaactagttccgttgaaacactctttgaaaaccttaaaccttaaatgataaatttatatgaaaaaatgtgcaccccatgcgtttaaa |
326 |
Q |
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| T |
15477686 |
aaaagaaaaatactaactagttccgttgaaacactctttgaaaaccttaaaccttaaatgataaatttatatgaaaaaatgtgcaccccatgcgtttaaa |
15477785 |
T |
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| Q |
327 |
aatgaagtaatttcttc-ttcttcnnnnnnnnnaaatatatatgtaggtgtttagtttaatgaaaatgacacaatagtttaaaatttggcccaacagagt |
425 |
Q |
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| T |
15477786 |
aatgaagtaatttcttctttttttttataaaatatatatatatgtatgtgtttagtttaatgaaaatgacacaatagtttcaaatttgg-ccaacagagt |
15477884 |
T |
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| Q |
426 |
tgatgatg |
433 |
Q |
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| T |
15477885 |
tgatgatg |
15477892 |
T |
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