View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16896_high_6 (Length: 398)
Name: NF16896_high_6
Description: NF16896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16896_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 30 - 366
Target Start/End: Original strand, 35293293 - 35293631
Alignment:
| Q |
30 |
aaatggtggctttgtcttggccaaaatcaaatggattacggatgttgtcaaaatgtgttgttcatatgtcaatgaagcacttgaattactaaaa--agta |
127 |
Q |
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| T |
35293293 |
aaatggtggctttgtcttggccaaaatcaaatggattatggatgttgtcaaaatgtgttgttcatatgtcaatgaagcacttgaattactaaaaaaagta |
35293392 |
T |
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| Q |
128 |
catccatacataaatgactataatttataatagttttaaacaaacgttacatgtttttctttgaaataaaacaaaggggttatagtcattttcatccatg |
227 |
Q |
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| T |
35293393 |
catccatacataaatgactataatttataatagttttaaacaaacgtcacatatttttctttgaaataaaataaaaggattatagtaattttcatccatg |
35293492 |
T |
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| Q |
228 |
aatgtttaacaaatagccgtaatagcctcttactgtatcgaaattacaaaatagttattgattgtccattttattatttgagtgtatattttcagttgca |
327 |
Q |
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| T |
35293493 |
aatgtttaatagatagccgtaatagcctcttactgtattgaaattataaaatagttattaattgtacattttattatttgagtgtatattttcagttgca |
35293592 |
T |
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| Q |
328 |
tttacattacatttagttaattacaagttactgatgatg |
366 |
Q |
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| T |
35293593 |
tttacattacatttagttaattacaagttacttatgatg |
35293631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 366
Target Start/End: Complemental strand, 28585008 - 28584946
Alignment:
| Q |
303 |
atttgagtgtatattttcagttgcatttacattacatttagttaattacaagttactgatgatg |
366 |
Q |
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| T |
28585008 |
atttgagtgtaaattt-caattgcatttacattacatttagtttgttacaagttagttatgatg |
28584946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 8407300 - 8407219
Alignment:
| Q |
209 |
atagtcattttcatccatgaatgtttaacaaatagccgtaatagcctcttactgtatcgaaattacaaaatagttattgatt |
290 |
Q |
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|||||||||||||||||| ||||| |||| |||| || || ||| ||| | |||||| ||||| |||||||||||||||| |
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| T |
8407300 |
atagtcattttcatccataaatgtgtaacgaataaccatattagtttctgaatgtatcaaaattttaaaatagttattgatt |
8407219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 2519076 - 2519027
Alignment:
| Q |
317 |
tttcagttgcatttacattacatttagttaattacaagttactgatgatg |
366 |
Q |
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| T |
2519076 |
tttcagttgcatttagattacatttagttagttataagttagttatgatg |
2519027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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