View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16896_high_7 (Length: 345)
Name: NF16896_high_7
Description: NF16896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16896_high_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 31108129 - 31107785
Alignment:
| Q |
1 |
ggaagtggtataaaacaaatgaatagttttttcttcttttgatggaagttgtccctcgtatgatttgaatgacatatagcagaaaacagaaattaactaa |
100 |
Q |
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| T |
31108129 |
ggaagtggtataaaacaaatgaatagttttttcttcttttgatggaagttgtccctcgtatgatttgaatgacatataacagaaaacagaaattaactaa |
31108030 |
T |
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| Q |
101 |
ctcagtttatgtatctgaggtttgatagtgttaaagtagtaaggttatgcagctaggtaaagttgggaaattaatgaagacttttttgcatattgatcaa |
200 |
Q |
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| T |
31108029 |
ctcagttcatgtatctgaggtttgatagtgttaaagtagtaaggttatgcagctaggtaaagttgggaaataaatgaagacttttttgcatattgatcaa |
31107930 |
T |
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| Q |
201 |
tgatctgatatctaatcatttataannnnnnnatggtgacagagttgtttggtaacgataattttctgataagctttataaagattttgagatccatgtt |
300 |
Q |
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| T |
31107929 |
tgatctgatatctaatcatttataatttttttatggtgatagagttgtttggtaacgataattttctgataagctttataaagattttgagatccatgtt |
31107830 |
T |
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| Q |
301 |
tgagcttattgtttataaggtatcattttttcttgcatcgtaact |
345 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31107829 |
tgagcttattgtttataacgtatcattttttcttgcatcgtaact |
31107785 |
T |
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