View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16896_high_8 (Length: 345)
Name: NF16896_high_8
Description: NF16896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16896_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 59 - 322
Target Start/End: Complemental strand, 27219913 - 27219651
Alignment:
| Q |
59 |
atgacactcacacacatatatagttacattcaatcacttttatgttttcaaattattacttgtattaatttcatgtctggtgtcggtatgaacatttcat |
158 |
Q |
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| T |
27219913 |
atgacactcacacacacatatggttacattcaatcacttttatgttttcaaattgttacttgtattaatttcatgtctggtgtcggtatgaacatttcat |
27219814 |
T |
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| Q |
159 |
aggtagacggattgaattgaatttagtgtaaggatttaatttgaacatactcaacagtgtaaaactctattaaaaatgtacattgaataatatctcatca |
258 |
Q |
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| T |
27219813 |
aggtagacg-actgaattgaatttagtgtaaggatttaatttgtacatactcaacagtgtaaaactctattaaatatgtacattgaataatatctcatca |
27219715 |
T |
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| Q |
259 |
tgtaaatatttgtaaagatatttaggtgcatattaatgtggccttgtgatagtctcgtgagcat |
322 |
Q |
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| T |
27219714 |
tgtaaatatttgtaaagatatttaggtacatattaatgtggccttgtggtagtcccgtgagcat |
27219651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 172 - 306
Target Start/End: Complemental strand, 27217153 - 27217018
Alignment:
| Q |
172 |
gaattgaatttagtgtaaggatttaatttgaacatactcaa-cagtgtaaaactctattaaaaatgtacattgaataatatctcatcatgtaaatatttg |
270 |
Q |
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| T |
27217153 |
gaattgaatttagtgtaaggatttaatttgtacatactcgatcagtgtaaaactgtatttacaatgtacattgaataatatctcatcatgtaaatatttg |
27217054 |
T |
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| Q |
271 |
taaagatatttaggtgcatattaatgtggccttgtg |
306 |
Q |
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| T |
27217053 |
tggagatatttaggaacataataaagtggccttgtg |
27217018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 27220011 - 27219914
Alignment:
| Q |
1 |
aaactattttagattaaacaaattaaaagtgtgtctggtgtctgagatgtatctatagatgacactcacacacatatatagttacattcaatcacttt |
98 |
Q |
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| T |
27220011 |
aaactattttagattaaacaaattaaaggcgtgtctggtgtctgacatgtatctatagatgacactcacacacacatatggttacattcaatcacttt |
27219914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 201
Target Start/End: Complemental strand, 24047831 - 24047803
Alignment:
| Q |
173 |
aattgaatttagtgtaaggatttaatttg |
201 |
Q |
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| T |
24047831 |
aattgaatttagtgtaaggatttaatttg |
24047803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 303
Target Start/End: Complemental strand, 37580592 - 37580461
Alignment:
| Q |
174 |
attgaatttagtgtaagg-atttaatttgaacatactcaa-cagtgtaaaactctattaaaaatgtacattgaataatatctcatcatgtaaatatttgt |
271 |
Q |
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||||||||||||||| || |||||||||| | |||||||| |||||||||||| | || | ||||| || ||| |||||||||| ||||||||||||| |
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| T |
37580592 |
attgaatttagtgtaggggatttaatttgtatatactcaatcagtgtaaaactgtcttttatatgtatatcaaatcatatctcatcgtgtaaatatttgt |
37580493 |
T |
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| Q |
272 |
aaagatatttaggtgcatattaatgtggcctt |
303 |
Q |
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| T |
37580492 |
agagatataaaggagcataataaagtggcctt |
37580461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 8013854 - 8013891
Alignment:
| Q |
81 |
gttacattcaatcacttttatgttttcaaattattact |
118 |
Q |
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| T |
8013854 |
gttacattcaatcacttatattttttcaaattattact |
8013891 |
T |
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