View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16897_high_14 (Length: 333)
Name: NF16897_high_14
Description: NF16897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16897_high_14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 29 - 333
Target Start/End: Complemental strand, 10194415 - 10194107
Alignment:
| Q |
29 |
aacgcatttaaagataaatatgatgaaagacaagcgaagtgcaaaagatccgatcactacttatacggtttagggttttct---------tgtcaattat |
119 |
Q |
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| T |
10194415 |
aacgcatttaaagataaatatgatgaaagacaagcgaagtgcaaaagatccgatcactacttatacggtttagggttttctggtttttcttgtcaattat |
10194316 |
T |
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| Q |
120 |
aatttgcgatttatgatcaaacactgttaggcggcatgttcagtaacagatgagttcgaattccttgatcctgatatcaggatgcctggaatggtgttag |
219 |
Q |
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| T |
10194315 |
aatttgcgatttatgatcaaacactgttaggctgcatgttcagtaacagatgagttcgaattccttgatcctgatatcaggatgcctggaatggtgttag |
10194216 |
T |
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| Q |
220 |
ggacagaaaattttgataagttccatgttgcagtgaatgcaattgatgcgatgcagtttatgacaaattgcaataccagattatgtactactggtataag |
319 |
Q |
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| T |
10194215 |
ggacagaaaattttgataagttccatgttgcagtgaatgcaattgattc-----agtttatgacaaattgcaataccagattatgtactactggtataag |
10194121 |
T |
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| Q |
320 |
gttatagaacacat |
333 |
Q |
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| T |
10194120 |
gttatagaacacat |
10194107 |
T |
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