View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16897_high_17 (Length: 331)
Name: NF16897_high_17
Description: NF16897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16897_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 31 - 312
Target Start/End: Original strand, 34687025 - 34687306
Alignment:
| Q |
31 |
ctctgatttcccgaatatgatcgaaccctcacctcaacaaaatgttgatctgcctctgctgaattatgatgacatcatgaacaatgaaaatgaaaatgga |
130 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34687025 |
ctctgatttcccgaatatgattgaaccctcacctcaacaaaatgttgatctgcctctgctgaattatgataacatcatgaacaatgaaaatgaaaatgga |
34687124 |
T |
|
| Q |
131 |
atctactcagtccatgatcttttttatcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtg |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34687125 |
atctactcagtccatgatcttttttatcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtg |
34687224 |
T |
|
| Q |
231 |
tcacgacaacttcaagtaatgatgattcaactgattttgctcctctacctccggccattgacatgagtgcacctgatgatgt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34687225 |
tcacgacaacttcaagtaatgatgattcaactgatcttgctcctctacctccggccattgacatgagtgcacctgttgatgt |
34687306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 61 - 310
Target Start/End: Original strand, 34694981 - 34695233
Alignment:
| Q |
61 |
acctcaacaaaatgttgatctgcctctgctgaattatgatgacatcatgaacaatgaaaatgaaaatggaatctactcagtccatgatcttttttatcaa |
160 |
Q |
| |
|
||||||| ||||||||||||||||||| || ||||||||| ||||||||||| ||| ||| |||||||||||| |||| || |||| |||||| ||||| |
|
|
| T |
34694981 |
acctcaagaaaatgttgatctgcctctacttaattatgataacatcatgaactatggaaacaaaaatggaatctgctcaatcaatgacctttttgatcaa |
34695080 |
T |
|
| Q |
161 |
gagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtgtcacgacaacttcaagtaatgatg---att |
257 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| ||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
34695081 |
gagaatattcaagaggagtcgattcatatgatgcatatgcatcaacaagacccacaacttaattttggtgtcacgacagcttcaagtaatgatgatcatt |
34695180 |
T |
|
| Q |
258 |
caactgattttgctcctctacctccggccattgacatgagtgcacctgatgat |
310 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
34695181 |
caactgatcttgctcctctccctccggccattgacatgagtgcacctgctgat |
34695233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 156 - 256
Target Start/End: Original strand, 8285050 - 8285150
Alignment:
| Q |
156 |
atcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtgtcacgacaacttcaagtaatgatga |
255 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| |||||| |||| |||||||||||| ||||||||||||| | ||||| ||||| |||||||| |
|
|
| T |
8285050 |
atcaagagaagattcaagaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatga |
8285149 |
T |
|
| Q |
256 |
t |
256 |
Q |
| |
|
| |
|
|
| T |
8285150 |
t |
8285150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University