View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16897_high_18 (Length: 329)

Name: NF16897_high_18
Description: NF16897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16897_high_18
NF16897_high_18
[»] chr5 (1 HSPs)
chr5 (22-329)||(38079759-38080066)


Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 22 - 329
Target Start/End: Original strand, 38079759 - 38080066
Alignment:
Q  22 catcatcatgttgaagtcgttagagatcttcctcttccgaatgaaatccaagtttgtgacaacctctcccttgatttgatgagaaggttgctgaactgga 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38079759 catcatcatgttgaagtcgttagagatcttcctcttccgaatgaaatccaagtttgtgacaacctctcccttgatttgatgagaaggttgctgaactgga 38079858  T
Q  122 aagcttcccctcattctatccatcccaagattggatggatgaagattctcgggttttcggtcctccacatcaaagtttgactcgccgtcagccccatcaa 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38079859 aagcttcccctcattctatccatcccaagattggatggatgaagattctcgggttttcggtcctccacatcaaagtttgactcgccgtcagccccatcaa 38079958  T
Q  222 catcatactcactgcaatcgttgatgaccatagaaccagtacctccaccagaggataacggggggcaataatctggaaaaagttctcgagccaaggattc 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38079959 catcatactcactgcaatcgttgatgaccatagaaccagtacctccaccagaggataacggggggcaataatctggaaaaagttctcgagccaaggattc 38080058  T
Q  322 ctcttgat 329  Q
    ||||||||    
T  38080059 ctcttgat 38080066  T

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