View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16897_high_19 (Length: 324)

Name: NF16897_high_19
Description: NF16897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16897_high_19
NF16897_high_19
[»] chr1 (1 HSPs)
chr1 (1-296)||(27022708-27023003)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 27023003 - 27022708
Alignment:
Q  1 agaggggggatattagtagactaacgtggtgaaaaaagtaacctataacaaatccgttatcatttttggacttcggtccatttatcttttcccgacggnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  27023003 agaggggggatattagtagactaacgtggtgaaaaaagtaacctataacaaatccgttatcatttttggacttcggtccatttatcttttcccgacggaa 27022904  T
Q  101 nnnnnnnnnnnnnnnnnnnntgtgaattatcatctccggtgatgttgaatctccggtcgttcattggcaccgtcgccgtcattctccaaccgtgttctcc 200  Q
                        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27022903 aataaaaaaaataaaaaaaatgtgaattatcatctccggtgatgttgaatctccggtcgttcattggcaccgtcgccgtcattctccaaccgtgttctcc 27022804  T
Q  201 gccgcaggttcgttacttttgcgtcgactttcacttcgaattttgaaattgtttcttcaatttggtagtgaaaaatcattctccatcgcaaatact 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27022803 gccgcaggttcgttacttttgcgtcgactttcacttcgaattttgaaattgtttcttcaatttggtagtgaaaaatcattctccatcgcaaatact 27022708  T

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