View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16897_high_2 (Length: 434)
Name: NF16897_high_2
Description: NF16897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16897_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 8 - 413
Target Start/End: Complemental strand, 2906401 - 2905996
Alignment:
| Q |
8 |
gttcaatgagatggacatcatccaaacaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctactgctgttagaagccctc |
107 |
Q |
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||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906401 |
gttcaatttgatgaacatcatacaaacaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctactgctgttagaagccctc |
2906302 |
T |
|
| Q |
108 |
gtggtacaaaatccccttctcattcccctattggtggtggcggtggagagcgtcgcgttcaattcggcacagttgtggaggtgggagatgaatttggtgg |
207 |
Q |
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||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906301 |
gtggtacaaaatccccttctcattcccctgttggtggcggcggtggagagcgtcgtgttcaattcggcacagttgtggaggtgggagatgaatttggtgg |
2906202 |
T |
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| Q |
208 |
cggcagcgaggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgataacggttgaacat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906201 |
cggcagcgaggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgataacggttgaacac |
2906102 |
T |
|
| Q |
308 |
tagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaagtgatga |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906101 |
tagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaagtgatga |
2906002 |
T |
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| Q |
408 |
tgatgt |
413 |
Q |
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|||||| |
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| T |
2906001 |
tgatgt |
2905996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 8 - 413
Target Start/End: Complemental strand, 2854373 - 2853968
Alignment:
| Q |
8 |
gttcaatgagatggacatcatccaaacaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctactgctgttagaagccctc |
107 |
Q |
| |
|
||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854373 |
gttcaatttgatgaacatcatacaaacaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctactgctgttagaagccctc |
2854274 |
T |
|
| Q |
108 |
gtggtacaaaatccccttctcattcccctattggtggtggcggtggagagcgtcgcgttcaattcggcacagttgtggaggtgggagatgaatttggtgg |
207 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| |||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
2854273 |
gtggtacaaaatccccttctcattcccctgttggtggtggcggtgaggagtgtcgggttcaatttggcacagttgtggagatgggagatgaatttggtgg |
2854174 |
T |
|
| Q |
208 |
cggcagcgaggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgataacggttgaacat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854173 |
cggcagcgaggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgataacggttgaacac |
2854074 |
T |
|
| Q |
308 |
tagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaagtgatga |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854073 |
tagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaagtgatga |
2853974 |
T |
|
| Q |
408 |
tgatgt |
413 |
Q |
| |
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|||||| |
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|
| T |
2853973 |
tgatgt |
2853968 |
T |
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