View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16897_high_27 (Length: 303)
Name: NF16897_high_27
Description: NF16897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16897_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 182 - 299
Target Start/End: Complemental strand, 33601358 - 33601240
Alignment:
| Q |
182 |
gatgggcaccaatgtaatgttgtcggaaagaagcatcaaaataaa-tgtagttgctatagatttctccacattttgaaatttgattggttatacatcaca |
280 |
Q |
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| T |
33601358 |
gatgggcaccaatgtaatgttgtcggaaagaagcatcaaaataaaatgtagttgctctagatttctccacattttgaaatttgattggttacacatcaca |
33601259 |
T |
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| Q |
281 |
tcaagggttcatctcactc |
299 |
Q |
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||||||||||||||||||| |
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| T |
33601258 |
tcaagggttcatctcactc |
33601240 |
T |
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Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 33601539 - 33601468
Alignment:
| Q |
1 |
aataaaatatgttatcctacctcatcccataaaaagtgggactggccctaggttcctgctgcaattgaggtg |
72 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33601539 |
aataaaatatgttatcctacctcatcccataaaaagtgggactggccctaggttcctgctgcaattgaggtg |
33601468 |
T |
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