View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16898_low_1 (Length: 373)
Name: NF16898_low_1
Description: NF16898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16898_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 359
Target Start/End: Original strand, 34567037 - 34567388
Alignment:
| Q |
11 |
cacagaagattaaaacatttttatagcannnnnnncttccataaaaacatattataatatttattataacgttgtcctattagaagaactaagattttgg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34567037 |
cacagaagattaaaacatttttatagcatttttttcttccataaaaacatattataatatttattataacgttgtcctattagaagaactaagattttgg |
34567136 |
T |
|
| Q |
111 |
tttaggcttgcaattaagacgcgtcacttaatcaaaaccaatggctccaaccaagaatcggaataatctttgatagcatagcagaggatcaggcaagacc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34567137 |
tttaggcttgcaattaagacgcgtcacttaatcagaaccaatggctccaaccaagaatcggaataatctttgatagcatagcagaggatcaggcaagacc |
34567236 |
T |
|
| Q |
211 |
acatatttgaagcatggactagtagccatatcattatcctatataaattaatttcagagtatggttcaacttaatgaaagtgactatgacccataatttt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34567237 |
acatatttgaagcatggactagtagccatatcattatcctatataaattaatttcagagtatggttcaacttaatgaaagtgactatgacccataatttt |
34567336 |
T |
|
| Q |
311 |
gggt---gtaatcataccatgtgtatggtgaacaatgcttcccaatttattg |
359 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34567337 |
gggtgtagtaatcataccatgtgtatggtgaacaatgcttcccaatttattg |
34567388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University