View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16898_low_3 (Length: 326)

Name: NF16898_low_3
Description: NF16898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16898_low_3
NF16898_low_3
[»] chr2 (1 HSPs)
chr2 (1-326)||(15067566-15067891)


Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 15067891 - 15067566
Alignment:
Q  1 gccgtagaaccacgttcgacttacgaatgggtcagtcaccttcgctcccaaacccaatcctcctccaccttccacccggccatctccacatacaccaaca 100  Q
    |||| |||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15067891 gccgcagaaccacgtttaccttccgaatgggtcagtcaccttcgctcccaaacccaatcctcctccaccttccaccaggccatctccacatacaccaaca 15067792  T
Q  101 tggtcaccgccggcgtccctcctgacaattttgctttccccgccgtcctcaaagcaaccgccggcatccaagaccttaacctcggcaaacaactccatgc 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15067791 tggtcaccgccggcgtccctcctgacaatttcgctttccccgccgtcctcaaagcaaccgccggcatccaagaccttaacctcggcaaacaactccatgc 15067692  T
Q  201 ccatgtcttcaaattcggacaagctctccctactgctgtccctaactccctcgttaacatgtacggtaaatgcggtgatatcgacgctgcacgccgtgtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15067691 ccatgtcttcaaattcggacaagctctccctactgctgtccctaactccttcgttaacatgtacggtaaatgcggtgatatcgacgctgcacgccgtgtg 15067592  T
Q  301 tttgatgaaataaccaaccgtgatga 326  Q
    ||||||||||||||||||||||||||    
T  15067591 tttgatgaaataaccaaccgtgatga 15067566  T

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