View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16899_high_1 (Length: 475)
Name: NF16899_high_1
Description: NF16899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16899_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 21 - 420
Target Start/End: Complemental strand, 41896397 - 41895998
Alignment:
| Q |
21 |
gaaccctcttgattattaatcccttgtaaaccaccataaccattctcaaacccttctaagccaaaattgaccccaagcttaaaatcttgcaaagcaaagc |
120 |
Q |
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| T |
41896397 |
gaaccctcttgattattaatcccttgtaaaccaccataaccattctcaaacccttctaagccaaaattgaccccaagcttaaaatcttgcaaagcaaagc |
41896298 |
T |
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| Q |
121 |
cacttgaattatacattgcactagactcagacaaagtcataggcataaaagaattcaaaccccttgatgaagaagcagttttcagaagctccatagcact |
220 |
Q |
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| T |
41896297 |
cacttgaattatacattgcactagactcagacaaagtcataggcataaaagaattcaaaccccttgatgaagaagcagttttcagaagctccatagcact |
41896198 |
T |
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| Q |
221 |
tgtagttttgtcttgatgatcagttgtgtaaggaagctcaatgaatttagatatggtgttataattatcctcagttgtttgtggtggataagctaggtta |
320 |
Q |
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| T |
41896197 |
tgtagttttgtcttgatgatcagttgtgtaaggaagctcaatgaatttagatatggtgttataattatcctcagttgtttgtggtggataagctaggtta |
41896098 |
T |
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| Q |
321 |
agatcttgtccttgatggatcttagggttttgagaagcagattgagggaaattattttgtgctgtagcaagatcaggattaatgataatattttttgtta |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41896097 |
agatcttgtccttgatggatcttagggttttgagaagcagattgagggaaattattttgtgttgtagcaagatcaggattaatgataatattttttgtta |
41895998 |
T |
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