View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16899_high_3 (Length: 370)
Name: NF16899_high_3
Description: NF16899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16899_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 38 - 360
Target Start/End: Complemental strand, 36749093 - 36748769
Alignment:
| Q |
38 |
gaatacttccaaaagtgattcccagccacacgaacgtgagaaa--aacaaataaacgaaatatagtgttagtagttggtaggtaaatggatccatatttc |
135 |
Q |
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| T |
36749093 |
gaatacttccaaaagtgattcccagccacacgaacgcgagaaagaaacaaataaacgaaatatagtgttagtagttggtaggtaaatggatccatatttc |
36748994 |
T |
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| Q |
136 |
cttaattagaagggaaggtcaaaatatcaaaactcttaattaaagcttagaaaacgatgtatatcagccctatgcttatgagttaagtatatttattatg |
235 |
Q |
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| T |
36748993 |
cttaattagaagggaaggtcaaaatatcaaaactcttaattaaagcttagaaaacgatatatatcagccctatgcttatgagttaagtatatttattatg |
36748894 |
T |
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| Q |
236 |
tatatgtacaaacgtttgccgctataaaaagtaaacaaagaaattagaaaaactagttttctcatttcattgatcttattgttctaataaaaaagttctt |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36748893 |
tatatgtacaaacgtttgccgctataaaaagtaaacaaagaaattagaaaaactagttttctcatttcattgatcttattgttctaataaaaaagttctt |
36748794 |
T |
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| Q |
336 |
tgagatggattatcagtatattctt |
360 |
Q |
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||||||||||||||||||||||||| |
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| T |
36748793 |
tgagatggattatcagtatattctt |
36748769 |
T |
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