View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16899_high_5 (Length: 346)
Name: NF16899_high_5
Description: NF16899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16899_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 31 - 326
Target Start/End: Original strand, 29963141 - 29963436
Alignment:
| Q |
31 |
tatggtccttattggcgtagtgtaaagaaactgtgcactttgaaacttctaagtgcttcaaaagttgagatgtttggtcctattaggaagaaggagttgg |
130 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29963141 |
tatggtccttattggcgtagtgtaaagaaactttgcactttgaaacttcttagtgcttcaaaagttgagatgtttggtcctattaggaagaaggagttgg |
29963240 |
T |
|
| Q |
131 |
atgttttggttaagtcattagagaaagttgttttggtaggtgaggttgtgaatgttagtgagattgttgagaatcttattgaagatattgtgtataagat |
230 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29963241 |
atgttttggttaagtcattagagaaagttgttttggtaggtgaggttgtgaatgttagtgagattgtagagaatcttattgaagatattgtgtataagat |
29963340 |
T |
|
| Q |
231 |
gatattgggtaggggtaagtatgagcaatttgatttaaagaagttggttcaagaaggaatggctatgcttggagcttttaatctggctgatgatgt |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29963341 |
gatattgggtaggggtaagtatgagcaatttgatttaaagaagttggttcaagaaggaatggctatgcttggagcttttaatctggctgattatgt |
29963436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 31 - 326
Target Start/End: Complemental strand, 30011657 - 30011362
Alignment:
| Q |
31 |
tatggtccttattggcgtagtgtaaagaaactgtgcactttgaaacttctaagtgcttcaaaagttgagatgtttggtcctattaggaagaaggagttgg |
130 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30011657 |
tatggtccttattggcgtagtgtaaagaaactttgcactttgaaacttcttagtgcttcaaaagttgagatgtttggtcctattaggaagaaggagttgg |
30011558 |
T |
|
| Q |
131 |
atgttttggttaagtcattagagaaagttgttttggtaggtgaggttgtgaatgttagtgagattgttgagaatcttattgaagatattgtgtataagat |
230 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30011557 |
atgttttggttaagtcattagagaaagttgttttggtaggtgaggttgtgaatgttagtgagattgtagagaatcttattgaagatattgtgtataagat |
30011458 |
T |
|
| Q |
231 |
gatattgggtaggggtaagtatgagcaatttgatttaaagaagttggttcaagaaggaatggctatgcttggagcttttaatctggctgatgatgt |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30011457 |
gatattgggtaggggtaagtatgagcaatttgatttaaagaagttggttcaagaaggaatggctatgcttggagcttttaatctggctgattatgt |
30011362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 37 - 326
Target Start/End: Original strand, 29990752 - 29991041
Alignment:
| Q |
37 |
ccttattggcgtagtgtaaagaaactgtgcactttgaaacttctaagtgcttcaaaagttgagatgtttggtcctattaggaagaaggagttggatgttt |
136 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || ||||||||||| | ||||||||| | ||| |
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| T |
29990752 |
ccttattggcgtagtgtaaagaaactctgcactttgaaacttcttagtgcttcaaaagttgagaagtcgggtcctattagaacagaggagttgggtattt |
29990851 |
T |
|
| Q |
137 |
tggttaagtcattagagaaagttgttttggtaggtgaggttgtgaatgttagtgagattgttgagaatcttattgaagatattgtgtataagatgatatt |
236 |
Q |
| |
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||||||| | || | |||| | |||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
29990852 |
tggttaacactttgaaaaaagcttctttggtaggtgaggttgtgaatgtcagtgagattgtagagaatgttattgaagatattgtgtataagatgatatt |
29990951 |
T |
|
| Q |
237 |
gggtaggggtaagtatgagcaatttgatttaaagaagttggttcaagaaggaatggctatgcttggagcttttaatctggctgatgatgt |
326 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| || ||||||||||||||||||||||| |||| |
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| T |
29990952 |
gggtagaggtaagtatgagcaatttgatttgaagaagttggttcaagaaggattggctttgattggagcttttaatctggctgattatgt |
29991041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 31 - 326
Target Start/End: Original strand, 29952036 - 29952331
Alignment:
| Q |
31 |
tatggtccttattggcgtagtgtaaagaaactgtgcactttgaaacttctaagtgcttcaaaagttgagatgtttggtcctattaggaagaaggagttgg |
130 |
Q |
| |
|
||||||||||||||||||||||| | |||||| |||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| | |||||| |
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| T |
29952036 |
tatggtccttattggcgtagtgtgaggaaactttgcactttaaaacttcttagtgcttcaaaagttgagatgtttggttctattaggaaggaaaagttgg |
29952135 |
T |
|
| Q |
131 |
atgttttggttaagtcattagagaaagttgttttggtaggtgaggttgtgaatgttagtgagattgttgagaatcttattgaagatattgtgtataagat |
230 |
Q |
| |
|
|||||||| |||||||||| ||||||| || |||||| ||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||| |
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| T |
29952136 |
atgttttgattaagtcattggagaaagctgctttggtgagtgaggttgtgaatgttagtgaggttgtagagaatcttattgaggatattgtgtataagat |
29952235 |
T |
|
| Q |
231 |
gatattgggtaggggtaagtatgagcaatttgatttaaagaagttggttcaagaaggaatggctatgcttggagcttttaatctggctgatgatgt |
326 |
Q |
| |
|
|||||||||| || | |||||||| |||||||| ||||||| | |||||||||| | | ||||| || ||||||||||||||||||||||| |||| |
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| T |
29952236 |
gatattgggtcggagcaagtatgatcaatttgacttaaagagggtggttcaagacgtattggctttggttggagcttttaatctggctgattatgt |
29952331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 31 - 326
Target Start/End: Original strand, 30005888 - 30006183
Alignment:
| Q |
31 |
tatggtccttattggcgtagtgtaaagaaactgtgcactttgaaacttctaagtgcttcaaaagttgagatgtttggtcctattaggaagaaggagttgg |
130 |
Q |
| |
|
||||||||||||||||||||||| | |||| | ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
30005888 |
tatggtccttattggcgtagtgtgaggaaattttgcactttgaaactttttagtgcttcaaaagttgagatgtttggtcctattaggaaggagaagttgg |
30005987 |
T |
|
| Q |
131 |
atgttttggttaagtcattagagaaagttgttttggtaggtgaggttgtgaatgttagtgagattgttgagaatcttattgaagatattgtgtataagat |
230 |
Q |
| |
|
|||||||||||| || || ||||||| || |||| |||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||| |
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| T |
30005988 |
atgttttggttatatctttggagaaagctgccttggagggtgaggttgtgaatgttagtgaggttgtagagaatcttattgaggatattgtgtataagat |
30006087 |
T |
|
| Q |
231 |
gatattgggtaggggtaagtatgagcaatttgatttaaagaagttggttcaagaaggaatggctatgcttggagcttttaatctggctgatgatgt |
326 |
Q |
| |
|
||| || ||| || ||||||||||||||||||| | || ||||| |||| ||||| ||||||| || | ||||||||||||||||||||| |||| |
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|
| T |
30006088 |
gatgtttggtcggagtaagtatgagcaatttgacatgaataagttagttctagaagcaatggctttgatgggagcttttaatctggctgattatgt |
30006183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 31 - 326
Target Start/End: Complemental strand, 30045266 - 30044971
Alignment:
| Q |
31 |
tatggtccttattggcgtagtgtaaagaaactgtgcactttgaaacttctaagtgcttcaaaagttgagatgtttggtcctattaggaagaaggagttgg |
130 |
Q |
| |
|
||||||||||||||||||||||| | |||| | ||||||||||||||||| |||||||||||||||||||||| |||||||||||| || |||||||| |
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| T |
30045266 |
tatggtccttattggcgtagtgtgaggaaattttgcactttgaaacttcttagtgcttcaaaagttgagatgtctggtcctattagaaaagaggagttga |
30045167 |
T |
|
| Q |
131 |
atgttttggttaagtcattagagaaagttgttttggtaggtgaggttgtgaatgttagtgagattgttgagaatcttattgaagatattgtgtataagat |
230 |
Q |
| |
|
| |||||||||| | || |||||| || |||||| |||||||||||||||||||||||| |||| |||||||| || |||||||||||||||||| | |
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|
| T |
30045166 |
gtattttggttaacactttgaagaaagctgctttggttggtgaggttgtgaatgttagtgaggttgtagagaatctaatagaagatattgtgtataagtt |
30045067 |
T |
|
| Q |
231 |
gatattgggtaggggtaagtatgagcaatttgatttaaagaagttggttcaagaaggaatggctatgcttggagcttttaatctggctgatgatgt |
326 |
Q |
| |
|
||| || ||| || ||||||||||||||||||| || |||| ||||||||||||||| ||||| || ||||||||||||||||||||||| |||| |
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| T |
30045066 |
gatgtttggtcggagtaagtatgagcaatttgacttgaagagtttggttcaagaaggattggctttgattggagcttttaatctggctgattatgt |
30044971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 31 - 326
Target Start/End: Original strand, 29999450 - 29999745
Alignment:
| Q |
31 |
tatggtccttattggcgtagtgtaaagaaactgtgcactttgaaacttctaagtgcttcaaaagttgagatgtttggtcctattaggaagaaggagttgg |
130 |
Q |
| |
|
||||||||||||||||| ||| | | |||| | ||||||||||||||||| ||||||||||||||||||| || ||||||||||| || ||||||||| |
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|
| T |
29999450 |
tatggtccttattggcgcagtatgaggaaattttgcactttgaaacttcttagtgcttcaaaagttgagaagtcgggtcctattagaaaagaggagttgg |
29999549 |
T |
|
| Q |
131 |
atgttttggttaagtcattagagaaagttgttttggtaggtgaggttgtgaatgttagtgagattgttgagaatcttattgaagatattgtgtataagat |
230 |
Q |
| |
|
|||||||||||| | || |||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
29999550 |
gtgttttggttaacactttgaagaaagcttctttggtaggtgaggttgtgaatgttagtgagattgtcgagaatcttattgaggatattgtgtataagat |
29999649 |
T |
|
| Q |
231 |
gatattgggtaggggtaagtatgagcaatttgatttaaagaagttggttcaagaaggaatggctatgcttggagcttttaatctggctgatgatgt |
326 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || |||||| || || |||| ||| | || || | ||||||||||||||||||||| |||| |
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| T |
29999650 |
gatattgggtagaggtaagtatgagcaatttgacttgaagaagatgattaaagatggattaactttgatgggagcttttaatctggctgattatgt |
29999745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 31 - 326
Target Start/End: Complemental strand, 30071096 - 30070801
Alignment:
| Q |
31 |
tatggtccttattggcgtagtgtaaagaaactgtgcactttgaaacttctaagtgcttcaaaagttgagatgtttggtcctattaggaagaaggagttgg |
130 |
Q |
| |
|
||||||||||||||||||||||| | |||| | ||||||||||||||||| |||||||||||||||||||||| |||||||||||| || |||||||| |
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|
| T |
30071096 |
tatggtccttattggcgtagtgtgaggaaattttgcactttgaaacttcttagtgcttcaaaagttgagatgtctggtcctattagaaaagaggagttga |
30070997 |
T |
|
| Q |
131 |
atgttttggttaagtcattagagaaagttgttttggtaggtgaggttgtgaatgttagtgagattgttgagaatcttattgaagatattgtgtataagat |
230 |
Q |
| |
|
| |||||||||| | || |||||| || |||||| |||||||||||||||||||||||| | || |||||||| || |||||||||||||||||| | |
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| T |
30070996 |
gtattttggttaacactttgaagaaagctgctttggttggtgaggttgtgaatgttagtgaggtagtagagaatctaatagaagatattgtgtataagtt |
30070897 |
T |
|
| Q |
231 |
gatattgggtaggggtaagtatgagcaatttgatttaaagaagttggttcaagaaggaatggctatgcttggagcttttaatctggctgatgatgt |
326 |
Q |
| |
|
||| || || || ||||||||||||||||||| || || || ||||||||| ||| | ||| | || ||||||||||||||||||||||| |||| |
|
|
| T |
30070896 |
gatgtttggacggagtaagtatgagcaatttgacttgaaaaatttggttcaacaagaattggttttgattggagcttttaatctggctgattatgt |
30070801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 38 - 326
Target Start/End: Original strand, 29943922 - 29944210
Alignment:
| Q |
38 |
cttattggcgtagtgtaaagaaactgtgcactttgaaacttctaagtgcttcaaaagttgagatgtttggtcctattaggaagaaggagttggatgtttt |
137 |
Q |
| |
|
|||||||||||||||| | ||||| || |||| |||||||| |||||||| |||||||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
29943922 |
cttattggcgtagtgtgagaaaactttgtacttcaaaacttcttagtgcttcgaaagttgagatgtttggtcctattaggaaggagaagttggatgtttt |
29944021 |
T |
|
| Q |
138 |
ggttaagtcattagagaaagttgttttggtaggtgaggttgtgaatgttagtgagattgttgagaatcttattgaagatattgtgtataagatgatattg |
237 |
Q |
| |
|
|||||| || || ||||||| || | ||| |||||||||||||||||||||||| ||| |||||| |||| || |||||||||||||||||| | ||| |
|
|
| T |
29944022 |
ggttaaatctttggagaaagctgctctggagggtgaggttgtgaatgttagtgaggctgtagagaatgttatagaggatattgtgtataagatggtgttg |
29944121 |
T |
|
| Q |
238 |
ggtaggggtaagtatgagcaatttgatttaaagaagttggttcaagaaggaatggctatgcttggagcttttaatctggctgatgatgt |
326 |
Q |
| |
|
||| || |||||||||| || |||| |||||| |||||||||||| | ||||||| || |||||||||||||| |||||||| |||| |
|
|
| T |
29944122 |
ggtcggagtaagtatgatcatattgacctaaagaggttggttcaagacgtaatggctttgattggagcttttaatatggctgattatgt |
29944210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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