View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1689_high_1 (Length: 700)
Name: NF1689_high_1
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1689_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 658; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 20 - 685
Target Start/End: Original strand, 2272123 - 2272788
Alignment:
| Q |
20 |
gggggagggttggggagattaatatttgagtattaggaggttgttattactatgtttctttgtactgatttggcgaaaaatgtagactatatatgcttct |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2272123 |
gggggagggttggggagattaatatttgagtattaggaggttgttattactatgtttctttgtactgatttggctaaaaatgtagactatatatgcttct |
2272222 |
T |
|
| Q |
120 |
taaattctcacagttataacactaacattgtatttatgtcaactgttttcaaatacagtggtgtattttgcatcctgatttggctggtgctgttgactat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272223 |
taaattctcacagttataacactaacattgtatttatgtcaactgttttcaaatacagtggtgtattttgcatcctgatttggctggtgctgttgactat |
2272322 |
T |
|
| Q |
220 |
gcttgtagtttatcaaattgtactacattgggatatggttcttgtaatggtttgagtcttcttgtgcatttaatatgtattgtcaagtgaataatcagaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272323 |
gcttgtagtttatcaaattgtactacattgggatatggttcttgtaatggtttgagtcttcttgtgcatttaatatgtattgtcaagtgaataatcagaa |
2272422 |
T |
|
| Q |
320 |
aggattggaattgagacttctctggtttggctattttacagatcatgattcatgatccatcagaaagttttgctcaaggattcacacaaatccaagagga |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272423 |
aggattggaattgagacttctctggtttggctattttacagatcatgattcatgatccatcagaaagttttgctcaaggattcacacaaatccaagagga |
2272522 |
T |
|
| Q |
420 |
atctatctgtttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaatgtagaataatttacg |
519 |
Q |
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| T |
2272523 |
atctatctgtttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaatgtagaataatttacg |
2272622 |
T |
|
| Q |
520 |
agatttggctcggtgtctaattttaccattctttttcataaatagcagaagaatgaataatgtttaaggacagacttaatgttcgtgtccaagacaaagt |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2272623 |
agatttggctcggtgtctaattttaccattctttttcataaatagcagaagaatgaataatgcttaaggacagacttaatgttcgtgtccaagacaaagt |
2272722 |
T |
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| Q |
620 |
gaatatatgttgatgttcatatcagtttattaatttgaattgtctagcttttcaattggttctgtg |
685 |
Q |
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| T |
2272723 |
gaatatatgttgatgttcatatcagtttattaatttgaattgtctagcttttcaattggttctgtg |
2272788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 429 - 503
Target Start/End: Complemental strand, 40772552 - 40772478
Alignment:
| Q |
429 |
tttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaa |
503 |
Q |
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|||||| ||||||||||||||| | ||||||||||||| ||||||||||||| ||||||| |||||| |||||| |
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| T |
40772552 |
tttaatccatctgactagtttacagttattgaattgacaatggaaattgattcctctttattctcgctttaggaa |
40772478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 353
Target Start/End: Original strand, 46353776 - 46353947
Alignment:
| Q |
197 |
atttggctggtgctgttgactatgcttgtagtttatcaaattgtactacattgggatatgg---ttcttgtaatggtttgagtctt-------------c |
280 |
Q |
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||||||||||| | |||| ||||| ||||| |||||| |||||||| |||| |||||||| |||||||||||||||||||||| | |
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| T |
46353776 |
atttggctggtagtattgattatgcatgtagcttatcagattgtactgcattaggatatggatcttcttgtaatggtttgagtcttgaagggaatgcttc |
46353875 |
T |
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| Q |
281 |
ttgtgcatttaatatgtattgtcaagtgaataatcagaaaggattggaattgagacttctctggtttggctat |
353 |
Q |
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|| ||||||||||||||||| ||||||| |||||||| ||||||||| |||| || || || ||||||||||| |
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| T |
46353876 |
ttatgcatttaatatgtattatcaagtgcataatcag-aaggattgggattgtgatttttcaggtttggctat |
46353947 |
T |
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