View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1689_high_11 (Length: 242)
Name: NF1689_high_11
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1689_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 4946370 - 4946581
Alignment:
| Q |
18 |
caacagaccccgatttcggaaactgccaaccactactccaaaccaaaaccggaagataaacatcaacaatcacaacaaccctaactctagaatcaacctc |
117 |
Q |
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| T |
4946370 |
caacagaccccgatttcggaaactgccaaccactactccaaaccaaaaccggaagataaacatcaacaatcacaacaaccctaaccctagaatcaacctc |
4946469 |
T |
|
| Q |
118 |
cacaacacacaaaacacgagcatcaatatccaaacatttcctcaaaaccaacgcatgaagctgattcacaacactgaaactcccattcaccatcccaacc |
217 |
Q |
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| T |
4946470 |
cgcaacacacaaaacatgtgcatcaatatccaaacatttcctcaaaaccaacgcatgaagctggttcacaacactgaaactcccattcaccatcccaacc |
4946569 |
T |
|
| Q |
218 |
ttcttcaccttc |
229 |
Q |
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|||||||||||| |
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| T |
4946570 |
ttcttcaccttc |
4946581 |
T |
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