View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1689_high_13 (Length: 236)
Name: NF1689_high_13
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1689_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4042413 - 4042634
Alignment:
| Q |
1 |
cctattccaaaagtaccttaattaaca--tttcaagttacacaattttgccaagttaaactggttttgaccattcaatgatgtcaaactgtatccaccat |
98 |
Q |
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| T |
4042413 |
cctattccaaaagtaccttaattaacacatttcaagttacacaattttgctaagttaaactggttttgaccattcaatgatgtcaaactgtatccaccat |
4042512 |
T |
|
| Q |
99 |
cacatgaaacatattataatatcttcatccactaaaagtgataatacatagaaacataacattaagaaagctatattttgaagaacgaagagaaagctta |
198 |
Q |
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| T |
4042513 |
cacatgaaacatattataatatcttcatccactaaaagtgataatacatagaaacataacattaagaaagctatattttgaagaacgaagagaaagctta |
4042612 |
T |
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| Q |
199 |
atagcacaaatgttcaatgatc |
220 |
Q |
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|||||||||||||||||||||| |
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| T |
4042613 |
atagcacaaatgttcaatgatc |
4042634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 219
Target Start/End: Complemental strand, 4118252 - 4118039
Alignment:
| Q |
9 |
aaaagtaccttaattaacatttcaagttacacaattttgccaagttaaactggttttgaccattcaatgatgtcaaactgtatccaccatcacatgaaac |
108 |
Q |
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|||| ||||||| ||||||||| | |||||||||||||| | || |||| ||||||||||| ||||||||||||||| ||| ||||||||||||||| |
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| T |
4118252 |
aaaaataccttatttaacatttaaggttacacaattttgttgaattgaactagttttgaccatacaatgatgtcaaactttatataccatcacatgaaac |
4118153 |
T |
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| Q |
109 |
atat-tataatat--cttcatccactaaaagtgataatacatagaaacataacattaagaaagctatattttgaagaacgaagagaaagcttaatagcac |
205 |
Q |
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|||| ||| |||| |||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
4118152 |
atatatattatataccttcatccactaaaagtgataacacatagatgcataacattaagaaagccatattttggagaacgaagagaaagcttaatagcac |
4118053 |
T |
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| Q |
206 |
aaatgttcaatgat |
219 |
Q |
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|||| ||||||||| |
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| T |
4118052 |
aaattttcaatgat |
4118039 |
T |
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