View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1689_high_3 (Length: 422)
Name: NF1689_high_3
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1689_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 10 - 408
Target Start/End: Original strand, 13282615 - 13283013
Alignment:
| Q |
10 |
aacaaaataattgacaagatagagaagcatatacccacctcnnnnnnnnnnnnnnnccacctagtgttcaacatctcaaactctattattcaaatggaac |
109 |
Q |
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| T |
13282615 |
aacaagataattgacaagatagagaagcatatacccacctcaaaaacaaaaaaaaaccacctagtgttcaacatctcaaactctattattcaaatggaac |
13282714 |
T |
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| Q |
110 |
aagatctcacaatcaaaaaagtgcaaattagaccctcttacatctccaattgtatcatgtctccaccttgtttccctgtcccaaatgagttccaatactc |
209 |
Q |
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| T |
13282715 |
aagatctcacaatcaaaaaagtgcaaattagaccctcttacatctccaattgtatcatgtctccaccttgtttccctgtcccaaatgagttccaatactc |
13282814 |
T |
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| Q |
210 |
taaaatccattatagtcctataaagagaaagtggaggtggaggaacctacttagaaaattcttgagggagagaagaatcttgggtgggcacaagcaaatt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13282815 |
taaaatccattatagtcctataaagagaaagtggaggtggaggaacctacttagaaaattcttgagggagagaagaatcttgggtgggcacaagcaaatt |
13282914 |
T |
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| Q |
310 |
tcttttcaatatgatcctattagctactcacagaattttgatgagggttgtcatcttgatgatgaacctagacgcctttcccatgtgtgccaagatgtt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13282915 |
tcttttcaatatgatcctattagctactcacagaattttgatgagggttgtcatcttgatgatgaaccaagacgcctttcccatgtgtgccaagatgtt |
13283013 |
T |
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