View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1689_high_5 (Length: 366)

Name: NF1689_high_5
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1689_high_5
NF1689_high_5
[»] chr8 (2 HSPs)
chr8 (81-349)||(2446002-2446275)
chr8 (81-114)||(8448082-8448115)
[»] chr3 (2 HSPs)
chr3 (95-176)||(31750973-31751052)
chr3 (89-160)||(35220585-35220655)
[»] chr7 (1 HSPs)
chr7 (81-142)||(44533742-44533803)
[»] chr1 (1 HSPs)
chr1 (143-175)||(16087051-16087083)
[»] chr2 (1 HSPs)
chr2 (148-179)||(9253195-9253226)
[»] chr6 (1 HSPs)
chr6 (95-177)||(34493613-34493695)
[»] chr5 (1 HSPs)
chr5 (81-118)||(25876209-25876246)
[»] chr4 (1 HSPs)
chr4 (147-175)||(23963051-23963079)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 81 - 349
Target Start/End: Original strand, 2446002 - 2446275
Alignment:
Q  81 tacactcgtcgtcgcttaacttaattttagataacgattttgtcacttatctaatttttcacatcattttggttcatttgcatatgaattttcaagcatg 180  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2446002 tacactcgtcgtcgcttaacttaatttcagataacgattttgtcacttatctaatttttcacatcattttagttcatttgcatatgaattttcaagcatg 2446101  T
Q  181 agttacttgatggtccatttaatcagacttgagagattagtcgttgaagcttacataaatatacctaacttcaaagtcaagtaattgaac-----tgatt 275  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||    
T  2446102 agttgcttgatggtccatttaatcagacttgagagattagtcgttgaagcttacataaatatacctaacttcaaagtcaagtaattgaactcgaatgatt 2446201  T
Q  276 aatgaattaacaaaacatatatagaattgaggtcgatcaagggatgtaaacaatccttaacaagactctcaccc 349  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  2446202 aatgaactaacaaaacatatatagaattgaggtcgatgaagggatgtaaacaatccttaacaagactcttaccc 2446275  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 114
Target Start/End: Complemental strand, 8448115 - 8448082
Alignment:
Q  81 tacactcgtcgtcgcttaacttaattttagataa 114  Q
    ||||||||||||| ||||||||||||||||||||    
T  8448115 tacactcgtcgtctcttaacttaattttagataa 8448082  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 31751052 - 31750973
Alignment:
Q  95 cttaacttaattttagataacgattttgtcacttatctaatttttcacatcattttggttcatttgcatatgaattttcaag 176  Q
    |||||||||||||||  ||| |||||||||| |||| |  |||| |||||||||||| || |||||||||||||||||||||    
T  31751052 cttaacttaattttacctaatgattttgtcatttattt--ttttgcacatcattttgattaatttgcatatgaattttcaag 31750973  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 35220585 - 35220655
Alignment:
Q  89 tcgtcgcttaacttaattttagataacgattttgtcacttatctaatttttcacatcattttggttcatttg 160  Q
    ||||| ||||||||||||| ||||||| |||| |||| ||||||  |||||||||||||||| |||| ||||    
T  35220585 tcgtcccttaacttaatttcagataacaatttcgtcatttatct-ttttttcacatcattttcgttcttttg 35220655  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 44533803 - 44533742
Alignment:
Q  81 tacactcgtcgtcgcttaacttaattttagataacgattttgtcacttatctaatttttcac 142  Q
    ||||||||||||| ||||||||||||| ||||||| ||||||||  ||||||  ||||||||    
T  44533803 tacactcgtcgtcccttaacttaatttcagataaccattttgtcctttatcttttttttcac 44533742  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 16087051 - 16087083
Alignment:
Q  143 atcattttggttcatttgcatatgaattttcaa 175  Q
    |||||||||||||||||||||||||||||||||    
T  16087051 atcattttggttcatttgcatatgaattttcaa 16087083  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 179
Target Start/End: Original strand, 9253195 - 9253226
Alignment:
Q  148 tttggttcatttgcatatgaattttcaagcat 179  Q
    ||||||||||||||||||||||||||||||||    
T  9253195 tttggttcatttgcatatgaattttcaagcat 9253226  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 34493613 - 34493695
Alignment:
Q  95 cttaacttaattttagataacgattttgtcacttatctaatttttcacatcattttggttcatttgcatatgaattttcaagc 177  Q
    ||||||||||||||| |||||||||  |||  |||| | ||||||||| || ||||||| | |||| ||||| ||||||||||    
T  34493613 cttaacttaattttaaataacgattccgtcttttattttatttttcacttctttttggtccgtttgaatatggattttcaagc 34493695  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 25876209 - 25876246
Alignment:
Q  81 tacactcgtcgtcgcttaacttaattttagataacgat 118  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  25876209 tacactcgtcgtcccttaacttaatttcagataacgat 25876246  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 23963079 - 23963051
Alignment:
Q  147 ttttggttcatttgcatatgaattttcaa 175  Q
    |||||||||||||||||||||||||||||    
T  23963079 ttttggttcatttgcatatgaattttcaa 23963051  T

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