View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1689_high_6 (Length: 363)
Name: NF1689_high_6
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1689_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 35636905 - 35637254
Alignment:
| Q |
1 |
gcttcgacgccaccatggccgtcgtaaattccaagaaagagtgcattgttagagacaacttcaacttggctatgatcttccatagcttcatttgcttgaa |
100 |
Q |
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| T |
35636905 |
gcttcgaagccagcatggccgtcgtaaactccaagaaagagtgcttttctagaggcaacttcaacttggctatgatcttccatagcttcatttgcttgaa |
35637004 |
T |
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| Q |
101 |
caaaagcactggaaaattgtccatagcaatgccttttgagatcaattgaacttgcatgagggtcttggtcgaataaagccatgt------tgtcattctt |
194 |
Q |
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| T |
35637005 |
caaaagcactggaaaattgtccatagcaatgccttttgagatcaatcgaacttgcatgagggtcttggtcgaataaagccatgttgatgttgtcattctt |
35637104 |
T |
|
| Q |
195 |
cctgttcctgcatagattgactatattttcaagccaaggatgcatctttgaaggagaaggaaatgtgagaaaagagagtgattttgattgtaagtgaaag |
294 |
Q |
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| T |
35637105 |
ccttttcctgcatagattgactatattttcaagccaaggatgcatctttgaaggagaaggaaatgtgagaaaagagagtgattttgattgtaagtgaaag |
35637204 |
T |
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| Q |
295 |
agtaatgatttgaagtatggaaaatagtgaatgtgaatgaatgaatattc |
344 |
Q |
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| T |
35637205 |
agtaatgatttgaagtatggaaaatagtgaatgtgaatgaatgaatattc |
35637254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 4 - 340
Target Start/End: Original strand, 35630457 - 35630804
Alignment:
| Q |
4 |
tcgacgccaccatggccgtcgtaaattccaagaaagagtgcattgttagagacaacttcaacttggctatgatcttccatagcttcatttgcttgaacaa |
103 |
Q |
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| T |
35630457 |
tcgaagccaccatggccgtcgtaaactccaagaaagagtgcatttctagaggcaacttcaacttggcttcgatcttccatatcttcatttgcttgaacaa |
35630556 |
T |
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| Q |
104 |
aagcactggaaaattgtccatagcaatgccttttgagatcaattgaacttgcatgag-ggtc--ttggtcgaataaagccatgttgtcattcttcctgtt |
200 |
Q |
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| T |
35630557 |
acgcactggaaaattctccatagcaatggtttttgagattaatcgaacttgcgagagagggccattcgtcgaataaagctaagttgtcattcttcctgtt |
35630656 |
T |
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| Q |
201 |
cctgcatagattgactatattttcaagccaaggatgcatctttgaaggagaaggaaatg--------tgagaaaagagagtgattttgattgtaagtgaa |
292 |
Q |
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| T |
35630657 |
cctgcatagattaactatattttcaagccaaggatgcattttggaaggaaaaggaaatgtgattgtttgagcaaagagagtgattttgattgtgagtgag |
35630756 |
T |
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| Q |
293 |
agagtaatgatttgaagtatggaaaatagtgaatgtgaatgaatgaat |
340 |
Q |
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| T |
35630757 |
agagtaatgatttgaagtatggaaaattgtgaatgtgattgaatgaat |
35630804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 35633266 - 35633308
Alignment:
| Q |
220 |
ttttcaagccaaggatgcatctttgaaggagaaggaaatgtga |
262 |
Q |
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| T |
35633266 |
ttttcaagccaaggatgcatttttgaaggaaaaggaaatgtga |
35633308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 9 - 262
Target Start/End: Complemental strand, 10318691 - 10318438
Alignment:
| Q |
9 |
gccaccatggccgtcgtaaattccaagaaagagtgcattgttagagacaacttcaacttggctatgatcttccatagcttcatttgcttgaacaaaagca |
108 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| |||||| ||||||||||||| ||| |||||||||| |||| |
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| T |
10318691 |
gccaccatggccatcgtaaattccaagaaagactgcattgttagaggcaacttcaatttggctttgatcttccatagtagtattggcttgaacaacagca |
10318592 |
T |
|
| Q |
109 |
ctggaaaattgtccatagcaatgccttttgagatcaattgaacttgcatgagggtcttggtcgaataaagccatgttgtcattcttcctgttcctgcata |
208 |
Q |
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| T |
10318591 |
ctggaaaattctccatagcaatggctttggagattaatcgatctcccgagagggtcttcgtcgaataaagcaaagttgtcattcctcatgttcctgtata |
10318492 |
T |
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| Q |
209 |
gattgactatattttcaagccaaggatgcatctttgaaggagaaggaaatgtga |
262 |
Q |
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| T |
10318491 |
gattaactatattttcaagccaagaatgcatctttgaaggaaaagaaaatgtga |
10318438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 9 - 262
Target Start/End: Complemental strand, 10335935 - 10335682
Alignment:
| Q |
9 |
gccaccatggccgtcgtaaattccaagaaagagtgcattgttagagacaacttcaacttggctatgatcttccatagcttcatttgcttgaacaaaagca |
108 |
Q |
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| T |
10335935 |
gccaccatggccatcgtaaattccaagaaagagtgcattgttagaggcaacttcaatttggctttgatcttccatagtagtattggcttgaacaacagca |
10335836 |
T |
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| Q |
109 |
ctggaaaattgtccatagcaatgccttttgagatcaattgaacttgcatgagggtcttggtcgaataaagccatgttgtcattcttcctgttcctgcata |
208 |
Q |
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|||||||||| |||||||||||| |||| |||| ||| || || | ||||||||| |||||||||||| | |||||||||| || |||||||| ||| |
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| T |
10335835 |
ctggaaaattctccatagcaatggctttgtagattaatcgatctcccgagagggtcttcgtcgaataaagcaaagttgtcattcctcatgttcctgtata |
10335736 |
T |
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| Q |
209 |
gattgactatattttcaagccaaggatgcatctttgaaggagaaggaaatgtga |
262 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||| ||| |||||||| |
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| T |
10335735 |
gattaactatattttcaagccaagaatgcatctttgaaggaaaagaaaatgtga |
10335682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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