View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1689_low_10 (Length: 306)
Name: NF1689_low_10
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1689_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 13883941 - 13884220
Alignment:
| Q |
10 |
gcatagggaaacgaagcagggaagagctccaacagcagctagtgaaattagtagcattctcaggtatgttcatgcttgactgcatgtaaatgtgacataa |
109 |
Q |
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| T |
13883941 |
gcatagggaaacgaagcagggaagagctccaacagcagccagtgaaattagtagcattctcaggtatgttcatgcttgactgcatgtaaatgtgacataa |
13884040 |
T |
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| Q |
110 |
ggcaaaggaacttggttacaaaaatggaatgaaatgacaaatgagttatttgtttctaaggagtggtagcacaaaattttcttgtgacaagatcttgcta |
209 |
Q |
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| T |
13884041 |
ggcaaaggaacttggttacaaaaatggaatgaaatgacata-gagttatttgtttctaaggagtgctagcacaaaattttcttgtgacaagatcttgcta |
13884139 |
T |
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| Q |
210 |
aattttaacatgtgagtatatccattcctgaaaacaaacattgttgctttgaacacttacaacttgtccttgggaactttg |
290 |
Q |
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| T |
13884140 |
aattttaacatgtgagtatatccattcctgaaaacaaacattgttgctttgaacacttacagcttgtccttgggaactttg |
13884220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 14024066 - 14024345
Alignment:
| Q |
10 |
gcatagggaaacgaagcagggaagagctccaacagcagctagtgaaattagtagcattctcaggtatgttcatgcttgactgcatgtaaatgtgacataa |
109 |
Q |
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| T |
14024066 |
gcatagggaaacgaagcagggaagagctccaacagcagccagtgaaattagtagcattctcaggtatgttcatgcttgactgcatgtaaatgtgacataa |
14024165 |
T |
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| Q |
110 |
ggcaaaggaacttggttacaaaaatggaatgaaatgacaaatgagttatttgtttctaaggagtggtagcacaaaattttcttgtgacaagatcttgcta |
209 |
Q |
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| T |
14024166 |
ggcaaaggaacttggttacaaaaatggaatgaaatgacata-gagttatttgtttctaaggagtgctagcacaaaattttcttgtgacaagatcttgcta |
14024264 |
T |
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| Q |
210 |
aattttaacatgtgagtatatccattcctgaaaacaaacattgttgctttgaacacttacaacttgtccttgggaactttg |
290 |
Q |
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| T |
14024265 |
aattttaacatgtgagtatatccattcctgaaaacaaacattgttgctttgaacacttacagcttgtccttgggaactttg |
14024345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 7684623 - 7684900
Alignment:
| Q |
10 |
gcatagggaaacgaagcagggaagagctccaacagcagctagtgaaattagtagcattctcaggtatgttcatgcttgactgcatgtaaatgtgacataa |
109 |
Q |
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||||| |||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| | || |
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| T |
7684623 |
gcatacggaaacgaagcagggaagagatccaacagcaaccagtgaaattagtagcattctcaggtatggtcatgcttgactgaatgtaaatgtgaaacaa |
7684722 |
T |
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| Q |
110 |
ggcaaaggaacttggttacaaaaatggaatgaaatgacaaatgagttatttgtttctaaggagtggtagcacaaaattttcttgtgacaagatct----t |
205 |
Q |
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| T |
7684723 |
ggcaagagaagatggtta-aaaatagaaaagaaacgacaaatgagtttttttttt------agagctagcacaaatttttctcgtgacaagatcttacat |
7684815 |
T |
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| Q |
206 |
gctaaattttaacatgtgagtatatccattcctgaaaac--aaacattgttgctttgaacacttacaacttgtccttgggaactttg |
290 |
Q |
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| T |
7684816 |
actaaaatttaacatgtga--aaatccattcctgaatacaaaaacatcgatgcattgtgcacttacagtttgtccttcggaactttg |
7684900 |
T |
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