View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1689_low_11 (Length: 293)
Name: NF1689_low_11
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1689_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 33647660 - 33647385
Alignment:
| Q |
1 |
ccccttctagtatgccttgtagtatcctcttccttgaaccgtagagactattagaaaccgagacaaccaagtcgctgcaccggttaccgtttgcatcagc |
100 |
Q |
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| T |
33647660 |
ccccttctagtatcccttgtagtatcctcttccttgaaccgtagagactattagaaaccgagacaaccaagttgctgcaccggttacgatatgcatcagc |
33647561 |
T |
|
| Q |
101 |
ggaactaacatctgcagatacatcaagcaaaagcttgacaacctcggcagaagcagcagaacaaccagaaacagcacaatgaagagcggtagccctatct |
200 |
Q |
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||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33647560 |
ggaactaacatctgcagatgcatcaagcagaagtttgacaacctcggcagaagcagcagaacaaccagaaacagcacaacgaagagcggtagccctatct |
33647461 |
T |
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| Q |
201 |
gagccatacactcggttaacatcaacacgaccggttccgagaatataagacaacacacccttgcttccatataaag |
276 |
Q |
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| T |
33647460 |
gagccacacactcggttaacatcaacacgaccggttccgagaatataagacaacacacccttgcttccatataaag |
33647385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 3 - 274
Target Start/End: Complemental strand, 25812476 - 25812206
Alignment:
| Q |
3 |
ccttctagtatgccttgtagtatcctcttccttgaaccgtagagactattagaaaccgagacaaccaagtcgctgcaccggttaccgtttgcatcagcgg |
102 |
Q |
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| T |
25812476 |
ccttctagtatggatcgtagtatcctcttccttgaaccgaatatactactagacaccgagacaatcaagtcgctgcactg-ttatcattcacatcaatgg |
25812378 |
T |
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| Q |
103 |
aactaacatctgcagatacatcaagcaaaagcttgacaacctcggcagaagcagcagaacaaccagaaacagcacaatgaagagcggtagccctatctga |
202 |
Q |
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| T |
25812377 |
aactaacatctgcagatgcatcaagcgaaaggttgataacttcagcagaagcagcagaacatccagaaacagcacaacgaagagcggtagccctatctga |
25812278 |
T |
|
| Q |
203 |
gccatacactcggttaacatcaacacgaccggttccgagaatataagacaacacacccttgcttccatataa |
274 |
Q |
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| T |
25812277 |
gccgcacactcggttgacatcaacacgactggttccgagaatataagacaacacacccttgcttccaaataa |
25812206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 36 - 269
Target Start/End: Complemental strand, 25818117 - 25817884
Alignment:
| Q |
36 |
gaaccgtagagactattagaaaccgagacaaccaagtcgctgcaccggttaccgtttgcatcagcggaactaacatctgcagatacatcaagcaaaagct |
135 |
Q |
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| T |
25818117 |
gaaccggagatactattagacaccgagacaatcaagtcgttacaccagttgtcattctcatcaacaacactaccatctgcagaagcatcaaccaaaagct |
25818018 |
T |
|
| Q |
136 |
tgacaacctcggcagaagcagcagaacaaccagaaacagcacaatgaagagcggtagccctatctgagccatacactcggttaacatcaacacgaccggt |
235 |
Q |
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| | || |||||||||||||||||||||||||| ||||| | |||||||||| ||| |||| ||||| ||| | |||| |||||| ||||||||||| |
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| T |
25818017 |
taataatctcggcagaagcagcagaacaaccagtaacagaaaaatgaagagctgtacccctgtctgaaccacaaggtcggctaacattgacacgaccggt |
25817918 |
T |
|
| Q |
236 |
tccgagaatataagacaacacacccttgcttcca |
269 |
Q |
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||| |||||||||||||||||||||||||||||| |
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| T |
25817917 |
tccaagaatataagacaacacacccttgcttcca |
25817884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 249
Target Start/End: Complemental strand, 30122007 - 30121843
Alignment:
| Q |
85 |
taccgtttgcatcagcggaactaacatctgcagatacatcaagcaaaagcttgacaacctcggcagaagcagcagaacaaccagaaacagcacaatgaag |
184 |
Q |
| |
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||||||| |||||| | | |||| |||| || ||| |||||||||||| ||||| || || || ||||||||||||| ||| ||| ||||||||||| |
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| T |
30122007 |
taccgttggcatcaacagcactagcatccgccgatgcatcaagcaaaatcttgataatcttgggggaagcagcagaacccccaacaaccgcacaatgaag |
30121908 |
T |
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| Q |
185 |
agcggtagccctatctgagcca-tacactcggttaacatcaacacgaccggttccgagaatataag |
249 |
Q |
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||| ||||| | ||| || ||| || || || ||||||||||| ||||| ||||| |||||||||| |
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| T |
30121907 |
agcagtagcaccatcggatccactagac-cgattaacatcaacccgacctgttccaagaatataag |
30121843 |
T |
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