View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1689_low_13 (Length: 243)
Name: NF1689_low_13
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1689_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 10931036 - 10930805
Alignment:
| Q |
1 |
ccaggtcttcctgatcacatagctcaactttgtctatcttcaatcaacccttctcttctcttcaaagtatgtcactcatggcgtagacttatctactcac |
100 |
Q |
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| T |
10931036 |
ccaggtcttcctgatcacatagctcaactttgtctatcttcaatcaacccttctcttctcttcaaagtatgtcactcatggcgtagacttatctactcac |
10930937 |
T |
|
| Q |
101 |
cttcttttccacctttcttttctctctatgcaattctctcaccacccaaatcacatcattcacactcaattcaattccacaactttgatccaatatcaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
10930936 |
cttcttttccacctttcttttctctctatgcaattctctcaccccccaaatcacatcattcacactcaattcaattccacaactttgatccaatatcgaa |
10930837 |
T |
|
| Q |
201 |
tacttggaaaatcctccctccaccaccaccac |
232 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
10930836 |
cacttggaaaatcctccctccaccaccaccac |
10930805 |
T |
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