View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1689_low_15 (Length: 238)
Name: NF1689_low_15
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1689_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 28601549 - 28601672
Alignment:
| Q |
98 |
gagggtaatgatctgatgtagtagtcgttagacattccaacctcgcatccggaaataagttgcaccaattatcatttgtcatagctcaatctagtttccc |
197 |
Q |
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| T |
28601549 |
gagggtaatgatctgatgtagtagtcgttagacattccaacctcgcatccggaaataagttgcaccaattatcatttgtcatagctcaatctagtttccc |
28601648 |
T |
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| Q |
198 |
ttctactatcagattcattccaag |
221 |
Q |
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| T |
28601649 |
ttctactatcagattcattccaag |
28601672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 28601410 - 28601510
Alignment:
| Q |
1 |
tcatgtctccatagtaagattactaacactgaagaacagagttatcaaattcaggctccaccaactaagtattctcaaacttaaattgataacgatcgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28601410 |
tcatgtctccatagtaagattactaacactgaagaacagagttatcaaattcaggctccaccaactaagtattctcaaacttaaattgataacgatcgag |
28601509 |
T |
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| Q |
101 |
g |
101 |
Q |
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| T |
28601510 |
g |
28601510 |
T |
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