View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1689_low_17 (Length: 231)
Name: NF1689_low_17
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1689_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 56276192 - 56276287
Alignment:
| Q |
118 |
gcatgacaatgtaattttcttacatatacaactaataaaatcacaccacatagatattttaggaactaaccaataaaaatattgtcactattgtgtgat |
216 |
Q |
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| T |
56276192 |
gcatgacaatgtaattttcttacatatacaactaataaaatcacaccacacagatattttaggaactaaccaataaaaa---tgtcactattgtgtgat |
56276287 |
T |
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Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 56276075 - 56276130
Alignment:
| Q |
1 |
cttatctcaccaacttatatttttagggcatttgcttgagctaatatttgtataac |
56 |
Q |
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| T |
56276075 |
cttatctcaccaacttatatttttagggcatttgcttgagctaatatttgtataac |
56276130 |
T |
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