View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1689_low_19 (Length: 213)
Name: NF1689_low_19
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1689_low_19 |
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| [»] scaffold0303 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 28860060 - 28859865
Alignment:
| Q |
10 |
tgaaatgaacaggtgagcaaaatcttcctgaccagaattgcaatttacacagtcagttggacaatgaacccctttatcatgtagtctaattcgggtgggc |
109 |
Q |
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||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28860060 |
tgaaaagaataggtgagcaaaatcttcctgactagaattgcaatttacacagtcagttggacaatgaacccctttatcatgtagtctaatccgggtgggc |
28859961 |
T |
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| Q |
110 |
aaaacacctcgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaattccagaccaatttcccggcctgtgatgatgt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| |
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| T |
28859960 |
aaaacacctcgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaattccagaccaatttccccgcctgcgaagatgt |
28859865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 18119211 - 18119016
Alignment:
| Q |
10 |
tgaaatgaacaggtgagcaaaatcttcctgaccagaattgcaatttacacagtcagttggacaatgaacccctttatcatgtagtctaattcgggtgggc |
109 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||| |
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| T |
18119211 |
tgaaaagaacaggtgagcaaaatctttctgaccagaattgcaatttacacagtcagttggacaacgaacccctttataatgtagtctaatccgggtgggc |
18119112 |
T |
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| Q |
110 |
aaaacacctcgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaattccagaccaatttcccggcctgtgatgatgt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
18119111 |
aaaacacctcgacacatacgccaaaccaagttcttcacttttggtgggactttaagtctccaaattccagaccaatttcccggcccgtgaagatgt |
18119016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 10770487 - 10770292
Alignment:
| Q |
10 |
tgaaatgaacaggtgagcaaaatcttcctgaccagaattgcaatttacacagtcagttggacaatgaacccctttatcatgtagtctaattcgggtgggc |
109 |
Q |
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||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10770487 |
tgaaaagaacagatgagcaaaatcttcctgaccaaaattgcaatttacacagtcagttggacaatgaacccctttatcatgtagtctaatccgggtgggc |
10770388 |
T |
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| Q |
110 |
aaaacacctcgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaattccagaccaatttcccggcctgtgatgatgt |
205 |
Q |
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| T |
10770387 |
gaaaaacctcgacacatatgccaaaccaagttcttcacttttggtggaactttgagtctccaaattccagaccaattgcccgacctgcgaagatgt |
10770292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0303 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0303
Description:
Target: scaffold0303; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 13467 - 13272
Alignment:
| Q |
10 |
tgaaatgaacaggtgagcaaaatcttcctgaccagaattgcaatttacacagtcagttggacaatgaacccctttatcatgtagtctaattcgggtgggc |
109 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13467 |
tgaaaagaacaggtgagcaaaatcttcctgaccagaatttcaatttacacagtcagttggacaatgaacccctttatcatgtagtctaatccgggtgggc |
13368 |
T |
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| Q |
110 |
aaaacacctcgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaattccagaccaatttcccggcctgtgatgatgt |
205 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| || ||||| |
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| T |
13367 |
aaaacacattgacacatacgccaaaccaagttcttcacttttggtgggactttgaatctccaaattctagaccaatttcccggcctgcgaagatgt |
13272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 10 - 205
Target Start/End: Original strand, 17753123 - 17753318
Alignment:
| Q |
10 |
tgaaatgaacaggtgagcaaaatcttcctgaccagaattgcaatttacacagtcagttggacaatgaacccctttatcatgtagtctaattcgggtgggc |
109 |
Q |
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||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
17753123 |
tgaaaagaacaggtgagcaaaatcatcctgaccagaattccaatttacacagtcagttggacaatgaacccctttatcatgtggtctaatctgggtgggc |
17753222 |
T |
|
| Q |
110 |
aaaacacctcgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaattccagaccaatttcccggcctgtgatgatgt |
205 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| |
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| T |
17753223 |
aaaacacctcgacacatacgccaaaccaagtttttcacttttggtgggactttgagtctccaaattccaaaccaatttctcggcctgtgaagatgt |
17753318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 66 - 197
Target Start/End: Original strand, 22738653 - 22738784
Alignment:
| Q |
66 |
ttggacaatgaacccctttatcatgtagtctaattcgggtgggcaaaacacctcgacacatacgccaaaccaagttcttcacttttggtgggactttgag |
165 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22738653 |
ttggacaatgaacccctttatcatgtagtctaatccgggtgggcaaaacacctcgacacatacgccaaaccaagttcttcacttttggtgggactttgag |
22738752 |
T |
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| Q |
166 |
tctccaaattccagaccaatttcccggcctgt |
197 |
Q |
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||||||||||||||||||||| || ||||||| |
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| T |
22738753 |
tctccaaattccagaccaattgcctggcctgt |
22738784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 22737327 - 22737387
Alignment:
| Q |
10 |
tgaaatgaacaggtgagcaaaatcttcctgaccagaattgcaatttacacagtcagttgga |
70 |
Q |
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||||| |||||| |||||||| ||||| ||||||||| |||||||||||||||||||||| |
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| T |
22737327 |
tgaaaagaacagatgagcaaactcttctcgaccagaatagcaatttacacagtcagttgga |
22737387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 27492493 - 27492349
Alignment:
| Q |
50 |
caatttacacagtcagttggacaatgaacccctttatcatgtagtctaattcgggtgggcaaaacacctcgacacatacgccaaaccaagttcttcactt |
149 |
Q |
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||||| ||| ||||||||||||| ||||||| ||||||||| ||| ||| | || |||||| || |||||||| |||||||||||||||||||| | |
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| T |
27492493 |
caattaacatagtcagttggacattgaaccc-tttatcatgaagtgtaacccaagttggcaaacaactccgacacattcgccaaaccaagttcttcacct |
27492395 |
T |
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| Q |
150 |
ttggtgggactttgagtctccaaattccagaccaatttcccggcct |
195 |
Q |
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| ||||||||||| |||||||||||| ||||||||| |||||||| |
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| T |
27492394 |
tgggtgggactttaagtctccaaatttcagaccaatagcccggcct |
27492349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 27457332 - 27457259
Alignment:
| Q |
119 |
cgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaattccagaccaatttcccgg |
192 |
Q |
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||||| || ||||| |||||||| || ||||||||||||||||| ||| ||||||| || ||||| | |||||| |
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| T |
27457332 |
cgacaaattcgccataccaagtttttgacttttggtgggactttaagtttccaaatccccgaccagtatcccgg |
27457259 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 20247390 - 20247325
Alignment:
| Q |
119 |
cgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaattccagaccaa |
184 |
Q |
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|||||||| ||||||| ||| ||||| ||||| ||||| ||||| ||||||||||| |||||||| |
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| T |
20247390 |
cgacacattcgccaaatcaaattctttactttaggtggaactttcagtctccaaataacagaccaa |
20247325 |
T |
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