View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1689_low_3 (Length: 453)
Name: NF1689_low_3
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1689_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Complemental strand, 41338436 - 41338012
Alignment:
| Q |
16 |
aactcaacatgccatcggtccttgagcttcgagtatgagaaacaacagatgcatcttttaattcttctaattgattatcagacttttggtaaataccctg |
115 |
Q |
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| T |
41338436 |
aactcaacatgtcatcggtccttgagcttcgggtatgagaaacaacagatgcatcttttaattcttctaattgattatcagacttttggtaaataccctg |
41338337 |
T |
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| Q |
116 |
agatttgagagaagctagatcctgctcatcctcaaattcttgacatgttagctttccaacttttttatttcttatatcaagattataaatgctgacacga |
215 |
Q |
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| T |
41338336 |
agatttgagagaagctagatccagctcatcctcaaattcttgacatgttagctttccaacttttttatctcttatatcaagattataaatgctgacacga |
41338237 |
T |
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| Q |
216 |
atccaagaaccattcccatgtctattccacgtgttctcgaaaaagtgatcaaattcagaaatcagatactcatcggtgcagtccaacattcgcatcatct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41338236 |
atccaagaaccattcccatgtctattccacgtgttctcgaaaaagtgatcaaattcagaaatcagatactcatcggtgcagtccaatattcgcatcatct |
41338137 |
T |
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| Q |
316 |
gttcagcaccatatgcaattgcactctttattctaaagaaattacctgtagaatagattataactagacaatcagataaattactcggagatattataac |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41338136 |
gttcagcaccatatgcaattgcactctttattctaaagaaattacctgtagaatagattataactagacaatcagataaattactcggagatattataac |
41338037 |
T |
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| Q |
416 |
cagacaatcagatatttagatagaa |
440 |
Q |
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| T |
41338036 |
cagacaatcagatatttagatagaa |
41338012 |
T |
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