View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1689_low_5 (Length: 418)
Name: NF1689_low_5
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1689_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 10 - 404
Target Start/End: Complemental strand, 32333519 - 32333125
Alignment:
| Q |
10 |
ataatactaacattgcccgttnnnnnnnntaaaatcaatactttgcgtatattcacattgtaattcttgtttgattgctcataaaatattgaaaagttac |
109 |
Q |
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| T |
32333519 |
ataatacttacattgcccgttaaaaaaaataaaatcaatactttgcgtatattcacattgtaattcttgtttgattgctcataaaatattgaaaagttac |
32333420 |
T |
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| Q |
110 |
atatttgcatataattcaaacaggttaagttctctgaaaatcctatcatgagtagttgtgtgaagccactggtgcagaacaaggaaaatccaattgtcct |
209 |
Q |
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| T |
32333419 |
atatttgcatataattcaaacaggttaagttctctgaaaatcctatcatgagtagttgtgtgaagccactggtgcagaacaaggaaaatccaattgtcct |
32333320 |
T |
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| Q |
210 |
tttacatggttttgacaggtgctaaaaaattatgcaggagacagaattggtttgttcattttatttctgaagttacccttggttttcactcctccttatt |
309 |
Q |
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| T |
32333319 |
tttacatggttttgacaggtgctaaaaaaatatgcaggagacagaattggtttgttcattttatttctgaagttacccttggatttcactcctccttatt |
32333220 |
T |
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| Q |
310 |
gttcagctcatgtttagaatggagatacacatatccattgcttgaggaagctggtattaagacatgggccattgacattcttggttggggtttct |
404 |
Q |
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| T |
32333219 |
gttcagctcatgtttagaatggagatacacatatccattgcttgaggaagctggtattgagacatgggccattgacattcttggttggggtttct |
32333125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 144 - 404
Target Start/End: Complemental strand, 19562405 - 19562147
Alignment:
| Q |
144 |
tgaaaatcctatcatgagtagttgtgtgaagccactggtgcagaacaaggaaaatccaattgtccttttacatggttttgacaggtgctaaaaaattatg |
243 |
Q |
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| T |
19562405 |
tgaaaatcccatcatgagcagttgtgtgaagccactggtgcagaacaaggaacctccgattgttcttctacatggtttcgataggtgctcaaaa--tttg |
19562308 |
T |
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| Q |
244 |
caggagacagaattggtttgtt-cattttatttctgaagtt-acccttggttttcactcctccttattgttcagctcatgtttagaatggagatacacat |
341 |
Q |
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|| |||||| |||| |||| || ||||||| | || ||||| | ||| |||| | | |||||| ||||| |||||||||||||||||||| || |
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| T |
19562307 |
caagagacaaaattagttttttacatttta-tgctcaagttgatcctgaattttatattgt-cttattattcagttcatgtttagaatggagatatggat |
19562210 |
T |
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| Q |
342 |
atccattgcttgaggaagctggtattaagacatgggccattgacattcttggttggggtttct |
404 |
Q |
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| T |
19562209 |
atccattgcttgaagaatctggtttcgagacttgggctatcgacattcttggttggggtttct |
19562147 |
T |
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