View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1689_low_6 (Length: 389)
Name: NF1689_low_6
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1689_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 43135343 - 43135583
Alignment:
| Q |
1 |
gtaagatttgtgaagttttgatttgaaagaaatcgtgttcctcttgcttacgctaaaatatgtctatttcaacaaatgtcacaatcatcctatggtcatg |
100 |
Q |
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| T |
43135343 |
gtaagatttgtgaagttttgatttgaaagaaatcatgttcctcttgcttacgcaaaaatatgtctatttcaacaaatgtcacaatcatcctatggtcatg |
43135442 |
T |
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| Q |
101 |
acaactggttttggtattcatttacgaattaatcaatgcatcgtgtctatcatcattgcaatttgtctcaaggcataacaactaacaagac----gagaa |
196 |
Q |
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| T |
43135443 |
acaactggttttggtattcatttacgaattaatcaatgcatcgtgtctgtcatcattgcaatttgtctcaaggcataacaactaacaagacgagagagaa |
43135542 |
T |
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| Q |
197 |
aatataactcctttgaaattctcatcttagatgtgatttag |
237 |
Q |
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| T |
43135543 |
aataaaactcgtttgaaattctcatcttagatgtgatttag |
43135583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 238 - 372
Target Start/End: Original strand, 43138663 - 43138797
Alignment:
| Q |
238 |
aggaggcggcacaaccataagctgcaaacgctcaaaatgcgatcatgcatgagccagatttgcaaggcatctaacactgcttcatcaaccatattttcac |
337 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
43138663 |
aggaggcagcacaaccataagctgcaaacactcaaaatgcgatcatgcatgagccagatttgcaaggcatctaacgctgcttcattgaccatattttcac |
43138762 |
T |
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| Q |
338 |
cataaaaaacgagggagctttataggggttgatct |
372 |
Q |
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| T |
43138763 |
cataaaaaacgagggagctttatcggggttgatct |
43138797 |
T |
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