View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1689_low_9 (Length: 308)

Name: NF1689_low_9
Description: NF1689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1689_low_9
NF1689_low_9
[»] chr1 (9 HSPs)
chr1 (128-232)||(52946192-52946296)
chr1 (129-232)||(52935150-52935253)
chr1 (129-232)||(52942785-52942888)
chr1 (127-232)||(18136412-18136518)
chr1 (129-213)||(11398290-11398374)
chr1 (128-213)||(31230351-31230436)
chr1 (128-183)||(52938560-52938615)
chr1 (128-209)||(42624006-42624086)
chr1 (163-221)||(41956083-41956140)
[»] chr4 (3 HSPs)
chr4 (129-232)||(40225473-40225576)
chr4 (151-220)||(5373898-5373966)
chr4 (151-213)||(17225263-17225324)
[»] scaffold0590 (2 HSPs)
scaffold0590 (128-222)||(5026-5122)
scaffold0590 (129-222)||(7704-7797)
[»] chr5 (2 HSPs)
chr5 (129-222)||(10548172-10548265)
chr5 (151-222)||(20319542-20319612)
[»] chr7 (4 HSPs)
chr7 (129-213)||(47762053-47762137)
chr7 (69-115)||(35758107-35758153)
chr7 (132-194)||(25998371-25998433)
chr7 (165-213)||(20290696-20290743)
[»] chr2 (1 HSPs)
chr2 (128-220)||(42735259-42735353)
[»] chr3 (3 HSPs)
chr3 (129-198)||(52098928-52099000)
chr3 (169-213)||(30174418-30174462)
chr3 (129-213)||(7051090-7051173)


Alignment Details
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 128 - 232
Target Start/End: Original strand, 52946192 - 52946296
Alignment:
Q  128 atgtaatgagtcttagagttagaaggggcattataggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagtatgaaataattga 227  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52946192 atgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagtatgaaatgattga 52946291  T
Q  228 tgtaa 232  Q
    |||||    
T  52946292 tgtaa 52946296  T

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Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 52935150 - 52935253
Alignment:
Q  129 tgtaatgagtcttagagttagaaggggcattataggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagtatgaaataattgat 228  Q
    |||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  52935150 tgtaatgagtctaaaagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagtatgaaatgattgat 52935249  T
Q  229 gtaa 232  Q
    ||||    
T  52935250 gtaa 52935253  T

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Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 52942785 - 52942888
Alignment:
Q  129 tgtaatgagtcttagagttagaaggggcattataggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagtatgaaataattgat 228  Q
    |||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  52942785 tgtaatgagtctaaaagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagtatgaaatgattgat 52942884  T
Q  229 gtaa 232  Q
    ||||    
T  52942885 gtaa 52942888  T

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Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 18136412 - 18136518
Alignment:
Q  127 catgtaatgagtcttagagttagaaggggcattataggaaataggaatatggacccttataaatatgag-aaaagccaaggaaataagtatgaaataatt 225  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||  |    
T  18136412 catgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaaagccaaggaaataagcatgaaatatgt 18136511  T
Q  226 gatgtaa 232  Q
    |||||||    
T  18136512 gatgtaa 18136518  T

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Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 11398374 - 11398290
Alignment:
Q  129 tgtaatgagtcttagagttagaaggggcattataggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 213  Q
    |||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11398374 tgtaatgagtcttagagttagaagtggcattatggaaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 11398290  T

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Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 31230436 - 31230351
Alignment:
Q  128 atgtaatgagtcttagagttagaaggggcattataggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 213  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||| | ||||||    
T  31230436 atgtaatgagtcttagagttagaaggggcgttatgggaaataggaatatggacccttataaatatgagaaaaaccaatggaataag 31230351  T

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Target: chr1; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 52938560 - 52938615
Alignment:
Q  128 atgtaatgagtcttagagttagaaggggcattataggaaataggaatatggaccct 183  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  52938560 atgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggaccct 52938615  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 42624006 - 42624086
Alignment:
Q  128 atgtaatgagtcttagagttagaaggggcattataggaaataggaatatggacccttataaatatgagaaaagccaaggaaa 209  Q
    ||||||||||||  ||||||  |||| ||||||||||||||  |||| ||||| |||||||||| ||| |||||||||||||    
T  42624006 atgtaatgagtcaaagagttgaaaggagcattataggaaatgtgaatgtggactcttataaataagag-aaagccaaggaaa 42624086  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 41956083 - 41956140
Alignment:
Q  163 ggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagtatgaaat 221  Q
    |||||||| |||| ||||||||||||||| |||||||| |||||||||| | |||||||    
T  41956083 ggaaatagaaata-ggacccttataaataagagaaaagtcaaggaaataggcatgaaat 41956140  T

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Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 40225576 - 40225473
Alignment:
Q  129 tgtaatgagtcttagagttagaaggggcattataggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagtatgaaataattgat 228  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  40225576 tgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggaccctaataaatatgagaaaagccaaggaaataagtatgaaatgattgat 40225477  T
Q  229 gtaa 232  Q
    ||||    
T  40225476 gtaa 40225473  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 5373966 - 5373898
Alignment:
Q  151 aggggcattataggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagtatgaaa 220  Q
    ||||||| ||| |||||||| |||| ||||||||||||||| |||||||| |||||||||||| ||||||    
T  5373966 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagtcaaggaaataagcatgaaa 5373898  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 17225324 - 17225263
Alignment:
Q  151 aggggcattataggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 213  Q
    ||||||| ||| |||||||| |||| ||||||||||||||| |||||||||||||||| ||||    
T  17225324 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaag 17225263  T

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Target: scaffold0590 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 5122 - 5026
Alignment:
Q  128 atgtaatgagtcttagagttagaaggggcattataggaaataggaatatggaccct--tataaatatgagaaaagccaaggaaataagtatgaaata 222  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||    
T  5122 atgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggacccttatataaatatgagaaaagccaaggaaataagcatgaaata 5026  T

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Target: scaffold0590; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 7797 - 7704
Alignment:
Q  129 tgtaatgagtcttagagttagaaggggcattataggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagtatgaaata 222  Q
    ||||||||||||||||| |||||   | |||| |  ||||||||||||| ||||||||||||| |||||||  |||| ||||||| ||||||||    
T  7797 tgtaatgagtcttagagctagaaaaagtattaaaaaaaataggaatatgaacccttataaatacgagaaaaatcaagaaaataagcatgaaata 7704  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 10548172 - 10548265
Alignment:
Q  129 tgtaatgagtcttagagttagaaggggcattataggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagtatgaaata 222  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  10548172 tgtaatgagtcttagagttagaaggggcattatggaaaataggaatatggacctttataaatatgagaaaagccaaggaaataagtatggaata 10548265  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 20319612 - 20319542
Alignment:
Q  151 aggggcattataggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagtatgaaata 222  Q
    ||||||| ||| |||||||| |||| ||||||||||||||| |||||||| | |||||||||| ||||||||    
T  20319612 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagtccaggaaataagcatgaaata 20319542  T

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Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 47762053 - 47762137
Alignment:
Q  129 tgtaatgagtcttagagttagaaggggcattataggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 213  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47762053 tgtaatgagtcttagagttagaaggggcattatggaaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 47762137  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 35758107 - 35758153
Alignment:
Q  69 gtttgtaatttgtaaatagatgataaacaatagatgttctttaattt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  35758107 gtttgtaatttgtaaatagatgataaacaatagatgttctttaattt 35758153  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 25998433 - 25998371
Alignment:
Q  132 aatgagtcttagagttagaaggggcattataggaaataggaatatggacccttataaatatga 194  Q
    |||||||| ||||||||||||  ||||||| | |||||||||||| ||||| |||||||||||    
T  25998433 aatgagtcatagagttagaagatgcattatggaaaataggaatatagacccgtataaatatga 25998371  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 20290743 - 20290696
Alignment:
Q  165 aaataggaatatggacccttataaatatgagaaaagccaaggaaataag 213  Q
    ||||| ||||||||||||||||||||| ||| ||||||||| |||||||    
T  20290743 aaatatgaatatggacccttataaataagag-aaagccaagcaaataag 20290696  T

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Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 128 - 220
Target Start/End: Original strand, 42735259 - 42735353
Alignment:
Q  128 atgtaatgagtcttagagttagaaggggcattataggaaataggaatatggacc--cttataaatatgagaaaagccaaggaaataagtatgaaa 220  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||| |||||||||||| ||||||    
T  42735259 atgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggaccctcttataaatatgagaaaaggcaaggaaataagcatgaaa 42735353  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 52098928 - 52099000
Alignment:
Q  129 tgtaatgagtcttagagttagaag---gggcattataggaaataggaatatggacccttataaatatgagaaa 198  Q
    ||||||||||||||||||||||||   || |||||||| |||||||||||| ||||||||||||||| |||||    
T  52098928 tgtaatgagtcttagagttagaagaaaggacattatagaaaataggaatatagacccttataaatataagaaa 52099000  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 30174462 - 30174418
Alignment:
Q  169 aggaatatggacccttataaatatgagaaaagccaaggaaataag 213  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||    
T  30174462 aggaatatggatccttataaataagagaaaagccaaggaaataag 30174418  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 7051090 - 7051173
Alignment:
Q  129 tgtaatgagtcttagagttagaaggggcattataggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 213  Q
    ||||||||||| | ||  | ||||||| | ||| ||||| ||||||||||||||||||||||| ||| ||| |||||||||||||    
T  7051090 tgtaatgagtcatggaactggaaggggtaatatgggaaaaaggaatatggacccttataaataagag-aaatccaaggaaataag 7051173  T

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